UFO09309.5prime Sequence
900 bp (883 high quality bases) assembled on 2011-08-15
> UFO09309.5prime
CAGTCGACATGGAATTCGCCGACCTTATAAAGACCCCCAAGCTGGACGGT
GTCCTGCTGCACGACCCATCGAATGCGGGGGCGTCGGGTGCAACAGTTGG
CACACTGTGCATCACAGGGCACCATTTGCTGCTCAGCGCCCGCCAGGAAA
CCAGCCAGGAGCTATGGTTGCTCCACAAGAACATCGACTGTGTGGAGAAG
AAGCCTAGTTTGTCGCAGAATATCGTGGTCGGTGGGATTATCACCCTGAA
GTGCAAGGACCTGCGCATCATTTCGTTGGAGATAAAGTGCGGCAAGGAGT
TCTTCAACGTGGCCGCATCGCTGGAGGCACTCAGTGCCATCCAGAACACC
GAACTGCTCTATCCATTCTTCTACCGGCCCATGTACTCGATCCTAGAGGA
CGGCTACACGATGTTTAGGCCCGAGCTGGAGTTCGCCAAACTCATAAGCG
GGGTTGGCATGGGCGGTGCGTCCTCGCCGAATGTGGCCAACATAACAATT
TGCATGCCATCAACTTCGACATCGACGTTGACTGTGGGCGCCGGCATTCC
CCATCCTCTGCAAAATGGCTATGCGATAGAAGCCCTTGCGTGTGGTGTTG
GTGGTGTGGGAGGTGGTGCGCTTCAAAAGTCCCCAGGCCTCCTGCGAGTG
GCGCATCACCAACGTCAAAAGAGACTTCAGCGTCTGTGCCACATATGGCG
CCACGCTAATTGTACCTAAAGCATTTACGGACGAGCAGATAGTGCTCTCC
GCTGCGTTCCGCGAAGGCGGCCGCTTCCCCTTGCTCAGCTACAGGCATGA
AAAATGGCGCCACACTAATGCGCAGCTCACATCCGCTGTCCATTCAGGGC
ATCAAGCGCTGTTAGCTGACGAGGCTATCCTTAATCTGTTGCTGGTTCCA
UFO09309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5026-RC | 2447 | CG5026-RC | 387..1273 | 8..895 | 4250 | 98.8 | Plus |
| CG5026-RB | 2822 | CG5026-RB | 387..1273 | 8..895 | 4250 | 98.8 | Plus |
| CG5026-RA | 2472 | CG5026-RA | 387..1273 | 8..895 | 4250 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8969496..8969881 | 417..803 | 1825 | 98.7 | Plus |
| 3L | 28110227 | 3L | 8969176..8969428 | 167..419 | 1265 | 100 | Plus |
| 3L | 28110227 | 3L | 8968914..8969073 | 8..167 | 800 | 100 | Plus |
| 3L | 28110227 | 3L | 8969948..8970035 | 809..895 | 330 | 94.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:51:52 has no hits.
UFO09309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:55 Download gff for
UFO09309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5026-RC | 379..1274 | 1..899 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:46 Download gff for
UFO09309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5026-RA | 381..1276 | 1..899 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:21 Download gff for
UFO09309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5026-RA | 381..1276 | 1..899 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:21 Download gff for
UFO09309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8969948..8970038 | 809..899 | 92 | | Plus |
| 3L | 8968908..8969073 | 1..167 | 97 | -> | Plus |
| 3L | 8969177..8969427 | 168..418 | 100 | -> | Plus |
| 3L | 8969498..8969885 | 419..808 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:46 Download gff for
UFO09309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8962008..8962173 | 1..167 | 97 | -> | Plus |
| arm_3L | 8962277..8962527 | 168..418 | 100 | -> | Plus |
| arm_3L | 8962598..8962985 | 419..808 | 98 | -> | Plus |
| arm_3L | 8963048..8963138 | 809..899 | 92 | | Plus |
