UFO09310.5prime Sequence
1112 bp (1020 high quality bases) assembled on 2011-08-15
> UFO09310.5prime
CAGTCGACATGGAACAGGTTGACTCCTCCACCGAGCTGCACCTGAATAGG
AAAGATCTGGCCGCGCTGGCCGAGGATGTTGTGAAAGAAGAGGTGATATT
AGAAAGCTCCAGCCATCACCATCATCATCATCACCACCAGTTGGACACCA
AGGTTCGCATGGTCACATCCTCCTCCAACGACAACAGTGGTAGCGGCGGC
GCCAGTGGCGGTACAAGCGGAGCGGGCGGAGGAAACGGCGGTGGCGGTGT
GGTTTCGGTGCCCGTATCCCTGCCCATCGGTTCGATGATAACCGGCACTA
CCTTCAATGTGATCACGCCCGACCAGCTGCCCCCTCACTTCAAGCCGATG
CTGTGCGTCGACAACAATGGCTACCTGTCCGGCAGCACGGTCAGCATGGG
CAACGACCTCAAGACGATCGTCATCCAGCAACAGCAGACGCAACCAGGCG
GCGGCGGTGGCGGCGCCAATAATGCGGGCACCAATACGACCGCCACAAAT
ACGATTGGACTGAATCACGATGGCTCCGGGAGCAACAATAGCCACGACAG
CCTGGCCACCTTGGAGCACGCCGCGGGCGGAGCGAGTGGCGTCGGCGGTG
GCGGCGGCGGAACGGGTGGTGGCTCCTCGGGATGGTCGGAGAACCCGTCA
ACCCAGCACAATGAGGTCTTCCAGATCCGCTGCAAAACCACCTGCGCCGA
GTTATACCGCAGCAAGCTGGGCTCCGGCGGCCGTGGACGCTGTGTGAAGT
ACAAGGACAAGTGGCATACGCCCAGTGAGTTTGAGCATGTGTGTGGCCGG
GGCTCCAGCAAGGATTGGAAAGCGTTCGATCAAGTACGGCGGCAAATCGC
TGCAGTCCCTCATCGATGAGGGTACGCTCACGCCGCACGCGACCAACTGC
AGCTGCACGTCTGCTGCGACGACGAAGCAGCTTCCGGCCCTGTCGTCTCT
TTACACGTACAGCGGCGGAAGCGGATCAACTGATCTCGATATGGAGTCTG
ACCCAACGCAGCGTAACACCCATCATAGTAACAACACAACAGTTACACAT
AACACAACCCGAGCGGGGGAGCGGCGCCTCCACTGTGGTGGATTTAACTG
CACTGTGGCGTG
UFO09310.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Deaf1-RB | 2416 | CG8567-RB | 362..1473 | 9..1109 | 5050 | 97.8 | Plus |
| Deaf1-RD | 3588 | CG8567-RD | 362..1482 | 9..1109 | 4950 | 97.1 | Plus |
| Deaf1-RA | 2425 | CG8567-RA | 362..1482 | 9..1109 | 4950 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19819209..19820001 | 138..930 | 3870 | 99.7 | Plus |
| 3L | 28110227 | 3L | 19818535..19818666 | 9..140 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:51:12 has no hits.
UFO09310.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:50 Download gff for
UFO09310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Deaf1-RB | 349..1459 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:24 Download gff for
UFO09310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Deaf1-RB | 355..1465 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:07 Download gff for
UFO09310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Deaf1-RB | 355..1465 | 1..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:07 Download gff for
UFO09310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19818528..19818666 | 1..140 | 97 | -> | Plus |
| 3L | 19819212..19820001 | 141..930 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:24 Download gff for
UFO09310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19811628..19811766 | 1..140 | 97 | -> | Plus |
| arm_3L | 19812312..19813101 | 141..930 | 99 | -> | Plus |
