UFO09311.5prime Sequence
1095 bp (970 high quality bases) assembled on 2011-08-15
> UFO09311.5prime
CAGTCGACATGTCTGGCCTCAAGAAATTCCAAAACACTGAGGAATGGCGT
CAGAAACTCCGTCAGTTTCTAATGACCGAGCGCTTGCCGAAAAAGCCCGT
GAAAATGGACGAAACGAAGGATATGCGCTATAGTTTGGAGATCGACGAGG
ATTTGAGGAGACCCTTGGAGGCGCGGGCCAAGAAAGTTCTGGCCGTTAAT
TCTGCCAGTCAAAGGACTGTTAATCTCGGCGAGGATACTATGTACGAGGC
AGGTGACTTGGAGCACTTGGACGATGGCGATGATAGCTTCAGTGCCTTTG
AGCGCATGTGCGACAAAACCGGTTCCGATCCGGATAGCACTCTTTTCCAG
TACCTGCACAGCGAGGACCGGAGTCAGGTGATGGCCAGGGCTAGGGATCA
TAGCACCGACGATCAGAAAGAGATCGATGCACTGCGTCGCATGCTAGAGG
CAGTGGGTACAGAAGACGATCTATTGGAGAACGAAAGTCCCGTCAAGGGG
GCGGAGTGCACTCACCTGGAGGACATTGAGGCGCCGTCGCGCTTTTGGGA
CAACACCCTGGCCGGAATGGACGAGACCTCATCCGACTCTGGGCTGACTC
CTAAAGCATTGACCAAGGTTTCGCCTGTCAAAATGGTGGGGCTGCTTCGC
CCCTCAACCATCATCGAAGACAGCGAACTGGAGTCGTCTGATGTGTCTTC
ACACACAAGCTTCCAAAGCGCTCGCACCCTAAAGACAAATGCATCTAGTT
CTTACGAAACAGCCACGGATACTTCCCTCAGTGGAACGCTCCTAAACGTC
GACGAATTTGTTTTACGCCGCAATTGCCAAGGCCAAGCCACCAGGAATGT
CCAAGGGAGAGGAGCTGGAGCTCTTAAGCGATCTTCATGGCAGTCTTAGA
GAGCTGGCCTCACTTCCGAAGATGACGTCGAGGAGGAGAGACGATATAGA
GGATACAATAATCGAGCTATCCTCCTTTCTGACGATGAGAGTGCAGCTAG
TTCCAGGAGTAAACAAGATGACCCGTTCCCGTGGTGTCCCTCAGTCCACG
AAAGAATCCCCTGAGCCGAAACCGCCGAAAGAGCGGTGAAATAAG
UFO09311.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip2-RB | 2223 | CG9188-RB | 175..1261 | 9..1091 | 4925 | 97.6 | Plus |
| sip2-RE | 2040 | CG9188-RE | 65..1078 | 82..1091 | 4560 | 97.5 | Plus |
| sip2-RA | 2111 | CG9188-RA | 136..1149 | 82..1091 | 4560 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6962622..6963555 | 1013..82 | 4315 | 98.6 | Minus |
| 2L | 23513712 | 2L | 6963744..6963817 | 82..9 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:51:16 has no hits.
UFO09311.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:50 Download gff for
UFO09311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RB | 166..1233 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:26 Download gff for
UFO09311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RB | 167..1234 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:09 Download gff for
UFO09311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RB | 167..1234 | 1..1066 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:09 Download gff for
UFO09311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6962569..6963554 | 83..1066 | 97 | <- | Minus |
| 2L | 6963744..6963825 | 1..82 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:26 Download gff for
UFO09311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6962569..6963554 | 83..1066 | 97 | <- | Minus |
| arm_2L | 6963744..6963825 | 1..82 | 96 | | Minus |
