UFO09313.5prime Sequence
1088 bp (1007 high quality bases) assembled on 2011-08-15
> UFO09313.5prime
CAGTCGACATGAGCATGGTGCGGCGGATTATCCTGCTGGGCCCCAAATAC
AGTGTGTGGGCAAAGGGAAGCGGAGCTGGTCAAACACATGGCTCGGCAAG
ATGCGTTATCCTAAGCGCAGGTTCTGCGGAGAACAGCGACTGTGGCGTAC
GACGCTTTCACCTGGCAACGCGGAACTGCGCGAGGAATCGACTGATGAGA
CTGGAGCCCGCGATGGCAATACCGGCGTATATTGATGTAACTAACGCACA
CTCAAGAACGCCAGAGGACTCCAGCGAGAGTGGGAGCGGCAGCGAAGGGG
GAGCCAGTGCGTCGGGAGGTAGTGGAGCGAAGAGCCCCGGCGGTGCGGCT
GGGTCTGGAGCAAGTTCGACCAGTGGTGCCGATCCGCCAGGCGGTGGCAG
TGACAAGTTCCTCTCGTGCCCAAAGTGCGGCAGCGCCTGCACCCAGGTTG
AGACCTTTGTCAGCTCGACGCGGTTCGTTAAGTGCGCCAAGTGCAACTAC
TTCTTCGTGGTGCTCTCGGAGGTGGAGACTAAGCAGCGCACCAAGGACGA
GCCCAAAAACCAGCGCAAGCCGCCACCTCCGCCACAGAAAATCATGGAGT
ATCTGGACAAACACGTGGTGGGCCAAGATTTTGCCAAAAAGGTGCTGGCG
GTGGCCGTCTACAATCATTATAAGCGCATCCATCACAATCTGCCGCAACT
GCAAAACCAGGGAGCGGGTGCCAGCAATGGAGCCGGTGGCGGCCTAGATG
GTATTCCTCGGCCCGATCTTCTACACATCACCGGTATTGGTCACACGCTG
AACAGCTCCCCGGGCAACGAACTGCCACCAAAGTCGCCGACTCAAATGGG
CATGGGCGGAGGAATGGAGGACCTGGACTTGGAGCAGACTAACCGGCGCA
TCATCTAGCATGCGCGTGAGGTGCGACAACCGGTCCGGATCAGAAATACT
GACGCAGTCCACCGATGTCAACTGAGAGAGTACATTATCATGTTGGCCCC
ACGGGATCCGTAGACCTGATCCCCCAACGATCGCATGCTGGATGTGCCTT
TCCCATGGCAACTGCACCAGTTAACCAAGCCGCCATTG
UFO09313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4538-RD | 3865 | CG4538-RD | 791..1882 | 8..1075 | 4810 | 97.4 | Plus |
| CG4538-RC | 3244 | CG4538-RC | 791..1882 | 8..1075 | 4810 | 97.4 | Plus |
| CG4538-RA | 3126 | CG4538-RA | 337..1428 | 8..1075 | 4810 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19900922..19901811 | 950..66 | 4200 | 99.4 | Minus |
| 3R | 32079331 | 3R | 19902840..19902899 | 67..8 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:52:05 has no hits.
UFO09313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:57 Download gff for
UFO09313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4538-RA | 784..1834 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:53 Download gff for
UFO09313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4538-RA | 784..1834 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:25 Download gff for
UFO09313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4538-RA | 330..1380 | 1..1034 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:25 Download gff for
UFO09313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19902841..19902906 | 1..66 | 95 | | Minus |
| 3R | 19900854..19901810 | 67..1010 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:53 Download gff for
UFO09313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15726576..15727532 | 67..1010 | 98 | <- | Minus |
| arm_3R | 15728563..15728628 | 1..66 | 95 | | Minus |
