UFO09317.5prime Sequence
1091 bp (986 high quality bases) assembled on 2011-08-15
> UFO09317.5prime
CAGTCGACATGTCTGTGGACAACCCGTATTACTTTTGCAATGAAACCAAG
TCGCCGCGCACCCCGGACTCGCAGTCCTCCAGCCGGGGATTCTCGATCTT
CAAGCGGCGCAACTCGAAGGGCAGCAGCCCCCGGCCGCTGGTGATGACCA
ATCCGGAACAGATGCGACTGATCACATCCGCCAATCTGGATACCACGGCT
ACCATGGCATTAGGAAGTCCGCGGGGCAGCTTCAATTCCCTCGCCGGCTA
TCCGCAACACGCGATTGAACTGCAGACGATGAACATGTACCGCCAGCGAT
CTGCAAATTCGCACTCAGAGTTCCGGGAACGCCTGAATTCTTGCAACGAG
ACCCACAGCTCCCAGTGTCCCGGAGGAGGAGGTGCATCCGTAGCTGGGGA
TCACGACGAGGTCTTCAATCCGCTGACATCGCCAACAAGTAGCAAATCGC
ATCGACATCACACCCTGCCAAGTGGCGGAACTCGTCGCCATTCCCTGGGA
AACTGGGCCCAACATCAGCATCAACAGCAACATCAACAGAACTCTGGAGC
AATGGGACTGGGATCTCCGGATGAGGTGCCCAGCATGATGGCGCCTCGAC
CGCCGCTCCTCTCGCCAAACAAATTCCGCGGCAGTTCCCATCGACGAAGA
GACAACTGCGGCAACGTGAACAACACGAGTGGATCGAGTGCATCCGGATT
CCTGGGCTCTCCCGGCTACAACATGGACGACATCCTGATCATCACCGCCA
AGCACAGCGAGCGCGCCTATTTGAGGGCCACTTTCCTGAAGAACCACTTC
GACAAGATCACCAAACAGCGCGGACGGAAACCATTCAATTTTCTGCACAT
CAAAATTGACGATGGTCCCTTCAGCGAGGAGATTGCCCACAAGTATCAGA
ACACAGCTTTGCAGATGTGATCTCTGTCCCGCACTTTTGGCCCTTCCTCA
CAGCTTTCTGATGACCCAGCTATCGGCATTATTCGCGTGAAAGTACTTGC
CATTTGTTGATGTCAACAGAGAGGTGAGGAATGCACAGTCGTCACTGGCA
GTACTACAATGCGTCGTTGTGTGTGCGAAATGAACAGTGCG
UFO09317.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stumps-RC | 4679 | CG31317-RC | 463..1545 | 9..1073 | 4915 | 98 | Plus |
| stumps-RE | 4594 | CG31317-RE | 390..1460 | 18..1073 | 4815 | 97.7 | Plus |
| stumps-RB | 3787 | CG31317-RB | 213..653 | 651..1073 | 1705 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14592281..14592520 | 18..257 | 1200 | 100 | Plus |
| 3R | 32079331 | 3R | 14593002..14593215 | 438..651 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 14604416..14604604 | 650..838 | 945 | 100 | Plus |
| 3R | 32079331 | 3R | 14592661..14592842 | 258..439 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 14604693..14604846 | 839..989 | 620 | 98.1 | Plus |
Blast to na_te.dros performed 2014-11-26 23:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2359 | 484..551 | 135 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2448..2476 | 510..538 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6762 | 510..541 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6783 | 510..541 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6804 | 510..541 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1586 | 509..539 | 110 | 83.9 | Plus |
UFO09317.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:00 Download gff for
UFO09317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stumps-RC | 453..1431 | 1..977 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:02 Download gff for
UFO09317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stumps-RC | 455..1433 | 1..977 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:34 Download gff for
UFO09317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stumps-RC | 455..1433 | 1..977 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:34 Download gff for
UFO09317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14592275..14592520 | 12..257 | 98 | -> | Plus |
| 3R | 14592661..14592842 | 258..439 | 100 | -> | Plus |
| 3R | 14593004..14593215 | 440..651 | 100 | -> | Plus |
| 3R | 14604418..14604604 | 652..838 | 100 | -> | Plus |
| 3R | 14604693..14604833 | 839..977 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:02 Download gff for
UFO09317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10430415..10430555 | 839..977 | 98 | == | Plus |
| arm_3R | 10417997..10418242 | 12..257 | 98 | -> | Plus |
| arm_3R | 10418383..10418564 | 258..439 | 100 | -> | Plus |
| arm_3R | 10430140..10430326 | 652..838 | 100 | -> | Plus |
| arm_3R | 10418726..10418937 | 440..651 | 100 | -> | Plus |
