UFO09321.5prime Sequence
1135 bp (1025 high quality bases) assembled on 2011-08-15
> UFO09321.5prime
CAGTCGACATGCCTTCGGCACGACCTGGTAGTCTCAAGGATCCGGAAATA
GCCGACCTATTCAACAAGCATGACCCGGAGAAAATCTTCGAGGACCTGCG
CGAAATCGGCCATGGGTCTTTCGGCGCGGTCTATTATGCGCGATGCAACC
TCACCAGGGAGATCGTGGCCATCAAAAAGATGTCGTACACCGGCAAGCAG
AGCCAGGAGAAGTGGCAGGATATTCTCAAAGAGATACGCTTCCTTCGCCA
ATTGAACCACCCGAACACCATAGAATACAAGGGATGCTATTTGCGCGAAT
CAACCGCCTGGCTGGTGATGGAGTACTGCGTGGGCTCCGCCTCGGACATC
ATCGAGGTGCACAAGAAGCCGCTGCACGAGGACGAGATCGCCGCCATCTG
TCTGGGCGTGCTCAGTGGGTTGAGCTATCTGCACTCGCTGGGCCGCATCC
ACCGTGACATCAAGGCGGGCAACATCCTGCTCACGGACAACGGCGTCGTC
AAGCTGGCCGATTTCGGTAGCGCTGCCATCAAGTGTCCGGCCAACAGTTT
TGTCGGCACGCCCTATTGGATGGCGCCCGAGGTGATCCTGGCCATGGACG
AGGGCCAATACGACGGCAAGGTGGACGTGTGGTCGCTGGGCATCACCTGC
ATCGAACTGGCAGAGCGCAAGCCTCCCTACTTTAACATGAACGCCATGTC
GGCGCTCTACCACATTGCGCAGAATGAGTCGCCGACTCTTCCGAAGAACG
ACTGGTCGGATGCGTTTTGCAGCTTTGTTGAACTGTGCCTCAAGAAGATG
CCAGCAGAGCGACCCTCGTCGGCCAAGCTGTTGACCCACGCCTACGTGAC
CCGACCGCGTTCCGACACCGTGCTGCTGGAGCTGATCGCGCGCACCAAGT
CAGCGGTGCGCGAGCTGGACAACCTCAATTACCGCAAGATGAAGAAGATA
CTCATGGTGGACACCTGCGAGAACGGAGAAGGGCCGTGGGGCGACACCGA
CGACCACAGGGACGAACCATGCCCGGCGGGCGACGGCAGCAAAAGCAATA
ATTATTACTTTCGAAACACTCCATTACCTCCGGGGGGTGATCGGGAGACA
GTTATCGAAGCTCCTCATCCATTCCAATACGGGCT
UFO09321.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tao-RJ | 2744 | CG14217-RJ | 503..1622 | 8..1135 | 5065 | 97.4 | Plus |
| Tao-RF | 5483 | CG14217-RF | 503..1622 | 8..1135 | 5065 | 97.4 | Plus |
| Tao-RH | 2720 | CG14217-RH | 443..1562 | 8..1135 | 5065 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19576695..19577200 | 743..238 | 2530 | 100 | Minus |
| X | 23542271 | X | 19576136..19576396 | 1006..743 | 1155 | 98.5 | Minus |
| X | 23542271 | X | 19577265..19577495 | 238..8 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:52:39 has no hits.
UFO09321.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:02 Download gff for
UFO09321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tao-1-RF | 507..1506 | 1..1006 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:08 Download gff for
UFO09321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tao-RH | 439..1438 | 1..1006 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:41 Download gff for
UFO09321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tao-RH | 439..1438 | 1..1006 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:41 Download gff for
UFO09321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19576136..19576395 | 744..1006 | 98 | <- | Minus |
| X | 19576695..19577199 | 239..743 | 100 | <- | Minus |
| X | 19577265..19577499 | 1..238 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:08 Download gff for
UFO09321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19470169..19470428 | 744..1006 | 98 | <- | Minus |
| arm_X | 19470728..19471232 | 239..743 | 100 | <- | Minus |
| arm_X | 19471298..19471532 | 1..238 | 98 | | Minus |
