UFO09322.5prime Sequence
1081 bp (970 high quality bases) assembled on 2011-08-15
> UFO09322.5prime
CAGTCGACATGAGAACTCTGCCATTTTTGTTGGCGCTGGCGCTCTTGGCC
TTTGGAGTTGCCTCATCATCATCCTCCACCACCAGCACCACCACATCGGT
AAAGCCAAAAACCGCAAATCCAAAGGCTGAGTCCGATAAACCCACCAAGC
AGCCATCGCCATCCGCATCCCCATCGCCATCATCCAAGGCCACAAACACC
TCAACGACCCGGCAATCTAAAGCCTTGAAGCCGGGCGAGAATCGTGGCAA
GAGAACGCTTTATGACTTTGGAAATGCCGGTTATCTGTATCCCGAAGTGG
CATCCCGGAGGGCTGGCTACGTGGACAACGCAGCGAGCTATTATCCCCAA
ACTGGTTACTACAATGGTCAGAGTGCAGTTGCTCAATATCCCGGAAGCTT
TGGACCCGCCTATGCTCAATATCCTCAGTATTTGGAGGCTCCAGAGCCCA
TCATCGAGATCATCATCAAGGATGCGAATGAAACATTAGCGGAAGAGCCC
GCGCAGCCGATTGTGACCAAGAAGAAGAAGAAGAAGGAGAAGGTGCACGT
GTTCTATGTAAACTACAAGAAGGATCAGAACAACAAGTTGCACCTGGAGT
CGCCAATTGCTTCGCTGAACAACGACGACAACGAGGAGGAAGAAGAGGAG
GAGGAGGAAGTCATCCAGTATCCGGTTACGCCCCTGCCTCCGGTAAAATC
CACCACCCTGCGTACTATTATCCACCCGGACTCGGAGAAATACCACAGTA
ACTCCGGTATTCATGTGTCGTTCGGAGCGGAGAACAAGCACCAGACCGGT
CACATTCTGGAGGAGCATGATGCTGAGAGCATTCAGCGCCAGTGGTGGCA
CTGCCGTCCTTCGGTGTCCTCCAAATCGGAGTCAGCTATGTGAGCAATTC
CCCGAGCGGATTACGAAGAGAAAACACTTTGGATCCCGGCCAGACCTATT
TCCAATATGCTCTTGGCAGCACTACCAACAGTCGGTATCACTACAGCAGC
AACAACAGCACTGCCCAGGCAGCAAGCACAACTACTCAGGCGCCATCGAC
TGTTGGTCCTCCCCCCACTACCGGACCAGCC
UFO09322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12964-RB | 3857 | CG12964-RB | 160..1240 | 9..1072 | 4850 | 97.7 | Plus |
| CG12964-RC | 3942 | CG12964-RC | 245..1325 | 9..1072 | 4850 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15488741..15489350 | 985..381 | 2595 | 98.4 | Minus |
| 2R | 25286936 | 2R | 15489547..15489899 | 381..29 | 1765 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1090..1162 | 966..1039 | 150 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2788..2901 | 974..1080 | 143 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2445 | 966..1050 | 120 | 63.5 | Plus |
UFO09322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:56 Download gff for
UFO09322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12964-RB | 213..1308 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:48 Download gff for
UFO09322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12964-RC | 237..1332 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:22 Download gff for
UFO09322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12964-RC | 237..1332 | 1..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:22 Download gff for
UFO09322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15488630..15489349 | 382..1081 | 95 | <- | Minus |
| 2R | 15489547..15489898 | 30..381 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:48 Download gff for
UFO09322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11376135..11376854 | 382..1081 | 95 | <- | Minus |
| arm_2R | 11377052..11377403 | 30..381 | 100 | <- | Minus |
