UFO09324.5prime Sequence
1039 bp (938 high quality bases) assembled on 2011-08-15
> UFO09324.5prime
CAGTCGACATGTCCCTGGCCGACATGGGCACAGCCTCTCGATCCGCCGGC
GGAGAAGGTGGTAGACACTATGATCTAGCCACGGGCGGAGCTGGAAGTGG
GGGTCATCCAGTGGGCGGCGGTCTGCCCGGAGGCCGCATGACGCACTCCC
TCAGCACTCCTTCCGGGGTGGATGGCACGCCCTCCACACCCCGACATCGC
GGCGGCAAAAAGCTGACTGTTCGCATCCAGATGCTGGACGACTCGATCAC
CATGTTCCAAGTACAGGCTAAAGCACTGGGCCGCGTGCTGTTTGAACAGG
TATGCCGTCAGCTGAATTTACTGGAGGCCGACTACTTCGGCTTGGAGTAC
CAGGAAGTCTCCACACATACCAAATACTGGCTGGATCTGGAGAAGCCAAT
GAACCGCCAGGTGGGCCTCTCTCTTATCGATCCAGTGCTGCGCTTCTGCA
TCAAGTTCTATACACCCGATCCAGCGCAATTGGAAGAGGAGTACACCAGG
TATTTGTTCTGCTTGCAAATCAAACGAGACCTGGCCACAGGCAGTCTGCA
GTGCAACGATAACACGGCGGCCTTAATGGCAAGCTACATTGTACAGGCGT
CATGCGGCGACTTCGTTCCGGAGGATTATCCCGACCATACTTATCTGTCC
TCGTATCGCTTTGTGCCCAACCAGGACGCCACCATGCAGCGAAAGATTAT
GGAGAACCACAAAAAGCATGTTGGTCAATCCCCGGCGGAGGCGGACCTTA
ACCTCTTGGAGACGGCTCGGAGGTGTGAGCTGTATGGCATGAAAATGCAT
CCGGCGAATGATGTGGAATGGGTGCCGCTTAATCTGGCTGTGGCCCACAT
GGGCATCACAGTCTTCAGAACATCACGCGGATCAACACCTCTCGGTGGGC
TAAGATACGCAGATTTCTTTCAAGCGCAGCGATTCCTGGTCAACTGCATC
CAGAAGGATAATGGAAATTACAAGGATACCGTCGAGTTTCTCTCGAGGGT
CGCAACGAGTGCAAAACCTCTCGGAAAAAATGAGTCGAA
UFO09324.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdep-RG | 15976 | CG44193-RG | 1012..2046 | 9..1039 | 4790 | 98.1 | Plus |
| Cdep-RC | 2537 | CG44193-RC | 1012..2046 | 9..1039 | 4790 | 98.1 | Plus |
| Cdep-RE | 5038 | CG44193-RE | 1012..2046 | 9..1039 | 4790 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4917874..4918132 | 9..267 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 4922590..4922826 | 265..501 | 1185 | 100 | Plus |
| 3R | 32079331 | 3R | 4922945..4923168 | 498..721 | 1120 | 100 | Plus |
| 3R | 32079331 | 3R | 4923234..4923476 | 722..960 | 895 | 95.1 | Plus |
| 3R | 32079331 | 3R | 4923532..4923609 | 963..1039 | 205 | 87.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:52:01 has no hits.
UFO09324.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:57 Download gff for
UFO09324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdep-RC | 1008..2042 | 9..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:51 Download gff for
UFO09324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdep-RE | 1012..2046 | 9..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:23 Download gff for
UFO09324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdep-RE | 1012..2046 | 9..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:23 Download gff for
UFO09324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4917874..4918131 | 9..266 | 100 | -> | Plus |
| 3R | 4922592..4922824 | 267..499 | 100 | -> | Plus |
| 3R | 4922947..4923168 | 500..721 | 100 | -> | Plus |
| 3R | 4923234..4923477 | 722..962 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:51 Download gff for
UFO09324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 743596..743853 | 9..266 | 100 | -> | Plus |
| arm_3R | 748314..748546 | 267..499 | 100 | -> | Plus |
| arm_3R | 748669..748890 | 500..721 | 100 | -> | Plus |
| arm_3R | 748956..749199 | 722..962 | 95 | -> | Plus |
