UFO09326.5prime Sequence
1112 bp (1012 high quality bases) assembled on 2011-08-15
> UFO09326.5prime
CAGTCGACATGGAGGTGACATTCAGCTCGGGCGGATCATCGAACGCCTCC
AGCGAGTGCGCCATAGACGGCGGCACGAATCGCTGTCGCGGCTTGGAGCC
CAACAATGGAACCTGCATCCTCAGCCAGGAGGTAAAGGATCTTTACAGAT
CCCTCTACACCGCCTCCAAGCAACTGGACGATGCCAAGAGGAATGTGCAG
TCGGTGGGACAGCTGTTCCAGCACGAAATCGAAGAGAAACGCTCGCTCCT
AGTGCAGCTGTGCAAGCAGATCATCTTCAAGGACTACCAGTCGGTGGGCA
AGAAGGTGCGCGAGGTGATGTGGCGACGTGGATACTACGAGTTCATTGCC
TTCGTGAAGAAGAACTGGCACAAGCAGTGCCAGGATGCGGCCACGGCCCA
AGAGAACATGCAAAAGCTGGAGCGATTCCTCTGCGCTGGCATCTTCAACT
ACAAACGATTGTCGGCACGCATGGAAGAGATCTATGATCTGGATCTAAAG
TATTTGATTGATTTCTCCATAATCAGTGATGGCTACATAAGCGACATGAT
CGGAGACACCATGGAGTCATCGCACTCGGGCACCCACGCGGTGGACAAGA
GTCTGGAGGCCGTGTCCTTTGCACTCGACACCATACACTCATCGCTGCTC
AGTCTGGGCGATCTTCATCGCTACTTTCTAGACTTTCGCATCGACAGCAA
ACTAAGCATAAGCAAGGAGCAGGTGGCCAAGTATTATCTGGAGGCCTTCA
AGCTTAATCCGGCCATTGGCATGGCCCAGAACCAGTTGGGTACACTGCAC
TACGGACAGAATCATGACCTGCACTCCACTTACCACTACTTGTACTCCCT
TGTGTGCATCATACCATTCGAACTAAGCGAAAATAATCTTAACAAGCTGT
TCGCCAAGCACACCGAATACTAGAGCGTATGGATCCAGAAAACTAGACTT
CAACATCGAGGACTTCTTTGCCGTTTCTATCTGATTGTGGACATATTTTT
TCTCGACAAGGAAGTGCGACTTAACGCCTCTGGTGCCACCGGGTGCTGAT
GATCTACGCAGATCTGTGCTCCAGCAACCTGGCCGTCGGAACCAGCATCT
CAGAATTGTTCC
UFO09326.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smg5-RC | 4102 | CG8954-RC | 116..1186 | 9..1072 | 5025 | 98.5 | Plus |
| Smg5-RB | 4809 | CG8954-RB | 282..1352 | 9..1072 | 5025 | 98.5 | Plus |
| Smg5-RA | 4021 | CG8954-RA | 276..1346 | 9..1072 | 5025 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13902846..13903722 | 1017..144 | 4190 | 99.3 | Minus |
| 2L | 23513712 | 2L | 13903781..13903920 | 148..9 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:52:57 has no hits.
UFO09326.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:04 Download gff for
UFO09326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smg5-RB | 156..1199 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:17 Download gff for
UFO09326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smg5-RA | 267..1310 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:47 Download gff for
UFO09326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smg5-RA | 267..1310 | 1..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:47 Download gff for
UFO09326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13902823..13903717 | 149..1039 | 98 | <- | Minus |
| 2L | 13903781..13903928 | 1..148 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:17 Download gff for
UFO09326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13902823..13903717 | 149..1039 | 98 | <- | Minus |
| arm_2L | 13903781..13903928 | 1..148 | 97 | | Minus |
