UFO09328.5prime Sequence
1074 bp (983 high quality bases) assembled on 2011-08-15
> UFO09328.5prime
CAGTCGACATGCAGGAGAAGTGGTTACTGCCCGCACTTTCGCTGGCGCTC
CTATTGGGCACCTGCTCGGCGCTCTACGAAGACCAGATCAAAAAGTTCGA
CTGGCGAGGCGTCAATGTGGGAGCACTGAAGCAGTCTCGCGTCGACCTCA
ACCATTTTCAGCCGCGGATTCTGGTCACCACCTATGAGGGAGTGGTGGCC
AGTCTGTGCGTAAAGACCGGCGAATTGGTGTGGCGGCAGGTGCTCGAGCA
GAAGCCGCGCGGCGACGTCAAGCTGCTCCAGGTGAGCGGATTCGCCGATG
ACAGCAGCGACACGGCCGCCGCTCCGATGGGCAGCAACATGGGCTTCGAC
ATGCTCACCGTTCAGGGACACGCTCCTGCTTTGGTGCGCGGCTGGAACAC
CAATATGGGTGCCCTTGAGTGGGAGTGGTCCATCATGCCCATGAACACGG
AGCGGGCCCAGGACGCCATGTGGATCTACAGCAAATCCGTGCTATATCAC
GTGCTGCCTGCCTGGCGGAGCCACCTCGAGGTGACGGCGTATTTCGCCAG
CTCGGGCCACAGCACTGGCAGCACCAGCAAGGTAATAGCTCCTTGGATCA
CCTCAGAGAGCTGCACCCTTAGCGGCACCTTCTACGTTTGTACGGACGGA
AAGCAGTTGATTAGTTTGGATCTCGTTTCCAAAAGCGGTCAAGTAATCCG
TACTTCGCTCGAGGCGGAGCCGAAAGGGAAAAACTCATGCCTTGACGGGT
CTGAATGGTGTTGTGATTGTGGATGGGAAGCCAATTAGTGTCAACAAGGA
CCAATCGATCTGCGGTGATCTGCGAAGCTCCAGCTTCGCCGTGGGCAGCT
TTAACTATCGCAAGTCTTGGCCTATGCAGATCTGTCCTCTGGAATCCTCA
GGATCAATGCTCTGTATTTTGGATACTGTGCACGGGCAGCCGAGTTGGAG
CAGGTCTGCCATCCCGAGCATTTTGGCACTTCGTCGCCTGAGCATCTTCG
ACTGTAGCAGATGCATGCAGGCAAGAACTGTCTGTTTTTTGTTAGCACAC
ACCTCGAATTACTCGTGCCATAGC
UFO09328.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2943-RD | 3051 | CG2943-RD | 138..1197 | 5..1056 | 4815 | 97.7 | Plus |
| CG2943-RC | 3271 | CG2943-RC | 138..1197 | 5..1056 | 4815 | 97.7 | Plus |
| CG2943-RB | 3292 | CG2943-RB | 138..1197 | 5..1056 | 4815 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7906417..7907061 | 748..103 | 3165 | 99.7 | Minus |
| 3R | 32079331 | 3R | 7906181..7906328 | 893..747 | 690 | 99.3 | Minus |
| 3R | 32079331 | 3R | 7907123..7907226 | 108..5 | 505 | 99 | Minus |
| 3R | 32079331 | 3R | 7905983..7906097 | 1006..894 | 295 | 89.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:53:08 has no hits.
UFO09328.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:06 Download gff for
UFO09328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2943-RA | 137..1200 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:22 Download gff for
UFO09328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2943-RB | 134..1197 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:50 Download gff for
UFO09328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2943-RB | 134..1197 | 1..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:50 Download gff for
UFO09328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7906181..7906327 | 748..893 | 99 | <- | Minus |
| 3R | 7906418..7907060 | 104..747 | 99 | <- | Minus |
| 3R | 7907128..7907230 | 1..103 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:22 Download gff for
UFO09328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3731903..3732049 | 748..893 | 99 | <- | Minus |
| arm_3R | 3732140..3732782 | 104..747 | 99 | <- | Minus |
| arm_3R | 3732850..3732952 | 1..103 | 98 | | Minus |
