UFO09329.5prime Sequence
1125 bp (1022 high quality bases) assembled on 2011-08-15
> UFO09329.5prime
CAGTCGACATGCCGACCTTCGGCAGTAAGTTGCTCGCCTGCCTGCTGCTC
AGCTCGGTGATCCTGGTCAGCGGACAGTTCGAGCACTATCTGGACAGCCT
GCGCGCCTCGGAATTGTACGAGTTCGAGGATGGCTCCCTGGGCAGCATAC
ACCTCTTGCCCAAGGGCGACAGCGAAACGATCGTGCTGCAACTGGAGCAG
CCCATTCACTTCTACGGGGAGCAGTACGAGCAGCTCTATATCAACACCAA
TGGCATCCTCACCTTCAACTCCGAGTTTCCCGAGTACCTGAACCAGCCCT
TTCCGCTGGAATATGCTTCGATAGCGGCCTTCTACTCGAACGTGGACACC
TCGTTCAGTGATGAGGGCACCTCGATCTCCCTGTTCGAGTCCAAGGAACA
AAGTATTCTCGACAGGGCCTCCAGTTTGGTGCGTTACGCCTTTAGCAGCC
AGTCTGAATTCGAGGCTCGTCAGGTGATCGTGGCCACGTGGCGCAATGTG
GGCTACTTTGACTCCAAGACGGACCGTCTGAACACCTTCCAGGTGGCACT
GATTGCCAACGAGCAGAGCACGTTTGTGCAATTCATCTATCCGGATGGCG
GTCTTAACTGGTTGCAGGGCGAAACAGCTGGACTTGGTCTCCCCGACATT
CGTGCCCAGGCGGGTTTCGTGGCTGAAGATGGACGCTTCTACACCTTGAA
CGGTTCCGGATCGGAGAATGCCCGTTTCCTGAGCGAAAGCACCAACCTGG
GTGTTCCCGGAGTCTGGCTGTTCGAAGTGGCTCCCATTGAGAACGAGCAG
AACGTGAGGTCTCCCGACAATGCCGAGTCCCTCACAGAGTCCCCCGCTTT
GGCTCTGAGTTGCCAGGCCCACGCCCATCAGTGCCACGAGAAGGCCGAGT
GCCACGACAAAGCCGAAGGATATTGCTGTGTCTGCGGATCTGGATTCTAT
GGCAATGGAAAGTCCTGCCTGCCTAATGATCCACCTATCCGGAGTGACAG
GAACACCTGACCCGGAAGGCTAAACAGCAGCCAGTTCAGCGGAGGAAGCC
AGCTGCAGCGTATGTGGTGACTAGGGGAGGGCGGCACTTATATCACATCA
ATTCCCTGATCTCGGAACTGGGGTC
UFO09329.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndg-RC | 4816 | CG12908-RC | 384..1495 | 9..1122 | 5130 | 97.9 | Plus |
| Ndg-RA | 4612 | CG12908-RA | 384..1495 | 9..1122 | 5130 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10316395..10316881 | 234..720 | 2420 | 99.8 | Plus |
| 2R | 25286936 | 2R | 10316976..10317261 | 720..1006 | 1355 | 99 | Plus |
| 2R | 25286936 | 2R | 10314274..10314504 | 9..239 | 1155 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:53:13 has no hits.
UFO09329.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:06 Download gff for
UFO09329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndg-RB | 349..1353 | 1..1006 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:24 Download gff for
UFO09329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndg-RA | 376..1380 | 1..1006 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:52 Download gff for
UFO09329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndg-RA | 376..1380 | 1..1006 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:52 Download gff for
UFO09329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10314266..10314504 | 1..239 | 98 | -> | Plus |
| 2R | 10316401..10316880 | 240..719 | 100 | -> | Plus |
| 2R | 10316976..10317261 | 720..1006 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:24 Download gff for
UFO09329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6201771..6202009 | 1..239 | 98 | -> | Plus |
| arm_2R | 6203906..6204385 | 240..719 | 100 | -> | Plus |
| arm_2R | 6204481..6204766 | 720..1006 | 98 | == | Plus |
