UFO09330.5prime Sequence
1146 bp (1039 high quality bases) assembled on 2011-08-15
> UFO09330.5prime
CAGTCGACATGAGTCGCCACAGCCAACTGAAGCTAGCGATGCCCTCGGTT
CACGGAGCTCCAGCCACCGCTCCTGGCTCGCCGATGAACGCCAAAGCCCG
GAGCGTGAAGCTCGGACTGGGTGTTAATCAGCGGACAGGTCGTGTGCAGT
GGTGTCCCGGTCTGACCTGCTGCAAAATGCTTCTACTTCTTCCAGTGGTA
ATGCTGCCACTGACCCTGGTGCTCATCCTGATCATGCGGCTGGACGGGAT
GCTGGCGGCGCTGCAATTGAACGAACAGAGGATGAGGGATCTGCGGAACT
CTCACAGCGAGGTGCCTGTCTATATGGAGGATTACGAAGCCCTTTTACCG
GAGGGTAGTACCTACAACGACCTGATCAACGAGGAGTTCATACTGCCGGC
GAGCAAGCGGACCCAACTGCAGATTTTGGCCGCGGAGAGGGCGCGTCGCT
GCCAACCATATCGCTACGGGAACGGGGAGTCCATGGAGTTGGAGGAGCGC
AACACGCTGATGAAGGACTCCCGAACCTCCTTCCTGCCACTGGGCATTCC
GCGAGAGTGCCTCGGCAGCGGCATTGAACTGGACATTAAACCCATAGATG
AGGAGGCCTACCAGAGGCAGAAGAAGCGCTACCAGGACATAGCTCCGTAT
TGGCTGGAGAAGATCAGAATACGGGAGCGCCGCGAGGCCGAACGTCATGC
AGAGGAGGCCAGTGCCGAGATCAGCGAGGCCACCGCCGCTCTGCAGAGTT
TCTGGAACGAGGAAGGCACTCGGGAGGGCATTCGCATGACCCAGGCCAAA
ACCATGAAGCGCTACATGGATAACAAAGTGGATCCCTGCGTGGATTTCTA
CAAGTACGCCTGCGGCAACTGGGAGCGCCTGCATCCAATACCCAAGGATA
AGGCCGGCTTCGATACCTTCGAAATGCTGCGTGAGAGTCTGGACCTGGTG
CTACGAAATCTCTGGAAAAAAAATACCCCTGTGCACTCCGCAGCGGAGCT
ACGAAAAGTCCCGGTGCGGAAAACTCTATTTAAGCTAATGGAGCAAGGGC
GAGGGTGTGAAGGGCCAAGCCTGAACAGCCGGCGTACCTTACCGGCGGCA
ACGCCTGCGTCCGCCCATGTCTGTAAAGAGGGCAGTTGCCTAACCG
UFO09330.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nep4-RA | 3632 | CG4058-RA | 204..1333 | 9..1146 | 5165 | 97.6 | Plus |
| Nep4-RC | 3629 | CG4058-RC | 388..1330 | 196..1146 | 4230 | 97.2 | Plus |
| Nep4-RB | 3331 | CG4058-RB | 90..1032 | 196..1146 | 4230 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20655592..20656639 | 1057..9 | 5000 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:53:17 has no hits.
UFO09330.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:07 Download gff for
UFO09330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep4-RA | 196..1317 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:26 Download gff for
UFO09330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep4-RA | 198..1319 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:54 Download gff for
UFO09330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep4-RA | 198..1319 | 1..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:54 Download gff for
UFO09330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20655524..20656645 | 1..1131 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:26 Download gff for
UFO09330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16481246..16482367 | 1..1131 | 97 | | Minus |
