UFO09334.5prime Sequence
1125 bp (1005 high quality bases) assembled on 2011-08-15
> UFO09334.5prime
CAGTCGACATGTATAATATATATGTGCTTAAAAAGCGACTGGCATACATT
ATTTCTCGTCATACATATATGTATATGCTCAAAAAACGTAATGGCAATGG
GCCATTTACCTTTAGTTTTGCAGGCATGGAAAGTCCCTGTGAATCCGAAA
GTTCGCTGGACGGCGGCACCATGCTGCCACCAAGCCCAGTTTCCCGGGAG
CAGCTCCAGAAGAGGATCGAATCGCTTACCCAGCAGAACAAGGTGCTGAA
AGCCGAACTGGATACCTTCAAGACCAAGTGCAAAGTGGTGCAAGAGGAGA
ATCGCTGCCTCAAGCAAGCCTCAGTCATCATTCAAGCCAAAGCCGAGCAG
GAGGAAGAATACATCTCAAACACGCTGCTAAAAAAGATTCAGGCCCTCAA
AAAGGAGAAGGAGACTCTGGCGCACCACTACGAGCGCGAGGAGGAGTGTC
TGACCAACGATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGGAGAAGTGC
AAGCTGGAGCAGACACTTGAGCAGGAGCAGGAGTGCCTCGTCAACAAGCT
TATGCGCAAGATTGAGAAGCTCCAGGCGGAGACGGACAACAAGCAGACCA
ATCTCGAGCAGCTGCGCCGCGAAATGGTCGAGTTGGAGAACACGCTTGAG
CAGGAACAGGAAGCTCTTGTAAACAAGCTGTGGAAGCGCATGGACAAGCT
GGAGACCGAGAAGCGTTCGCTGCAAATCAAGCTGGATCAGCCGGTTTCCG
ATCCGACTACGCCGCGAGACATCACAAACAACGCCCATGCCAATGGTGGC
GATACGGCCACCAGTTTGAGTGCTCATATCCAGATTCTGCGCTCCGAAGT
GCTTCGCTATCGCTCCGACCTGCGAGCGCTCAGAATGAAGCCACTATCAA
AACACAGCAGTATGCGCAGGAAGAGAGTCGATTCGCGAGAAACGCTCGCC
TTCAGCGGCAGCTAAAGCAGGAGGTGGAGCGCCCGCGAAGCCCTATGCCG
GCACCCCTCTCCGAATCGGATCCCTCGCTTGGGAGATGGACGAGGAACAG
CTCTACACCTAGGAAACTTGATTGGGGAGAGAGGCGAGTCGCGCTCCGCG
TTGTAGACGACAGCAGCGACGCGTC
UFO09334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RA | 2482 | CG6664-RA | 308..1241 | 114..1048 | 4380 | 98.2 | Plus |
| CG6664-RB | 2552 | CG6664-RB | 380..1311 | 116..1048 | 4370 | 98.2 | Plus |
| CG6664-RC | 2603 | CG6664-RC | 436..1362 | 121..1048 | 4345 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17014190..17014904 | 1048..333 | 3180 | 98.1 | Minus |
| 3L | 28110227 | 3L | 17015140..17015373 | 242..9 | 1110 | 98.3 | Minus |
| 3L | 28110227 | 3L | 17014987..17015077 | 332..242 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:52:44 has no hits.
UFO09334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:03 Download gff for
UFO09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RD | 403..1462 | 1..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:10 Download gff for
UFO09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 306..1257 | 109..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:44 Download gff for
UFO09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 306..1257 | 109..1065 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:44 Download gff for
UFO09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17014174..17014904 | 333..1065 | 97 | <- | Minus |
| 3L | 17014987..17015077 | 242..332 | 100 | <- | Minus |
| 3L | 17015141..17015378 | 1..241 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:10 Download gff for
UFO09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17007274..17008004 | 333..1065 | 97 | <- | Minus |
| arm_3L | 17008087..17008177 | 242..332 | 100 | <- | Minus |
| arm_3L | 17008241..17008478 | 1..241 | 96 | | Minus |
