Clone UFO09336 Report

Search the DGRC for UFO09336

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:93
Well:36
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO09336.5prime Sequence

315 bp (212 high quality bases) assembled on 2011-08-15

> UFO09336.5prime
CAGTCGACATGAAAGCAAGCTTATTTGAAGCTAAAATCGAACGTCTGGGG
CGTTCAGATTACGGACTTTCGGCCATCTTAGAGTGGAAATATGACACGAA
TGAGGAAACGATGGTTGAGGCACAAGCGTATCGCAGTAATTTCGGGGCGA
TGAGAGTGATTACAAGCTGCTACCCTGGGGCAATACCCAAACAGCCCTTT
CTATGATTACATCACCCCCTACTATAAGGAATGTGGTTCCCAAAAAACCT
CGGCTACTGGCTCCAATCTACCCCAAATACAAAAATAAATTTTAGCCTCC
CCTGGCCAAAAAAAC

UFO09336.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG18536-RA 788 CG18536-RA 277..571 9..310 1150 94.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18295091..18295199 9..115 480 98.2 Plus
2R 25286936 2R 18295253..18295433 113..301 460 91.5 Plus
Blast to na_te.dros performed on 2014-11-26 23:52:53 has no hits.

UFO09336.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:04 Download gff for UFO09336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18536-RA 273..575 4..315 92   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:15 Download gff for UFO09336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18536-RA 273..575 4..315 92   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:46 Download gff for UFO09336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18536-RA 273..575 4..315 92   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:46 Download gff for UFO09336.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18295087..18295197 4..113 96 -> Plus
2R 18295254..18295445 114..315 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:15 Download gff for UFO09336.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14182592..14182702 4..113 96 -> Plus
arm_2R 14182759..14182950 114..315 91   Plus