UFO09337.5prime Sequence
1112 bp (970 high quality bases) assembled on 2011-08-15
> UFO09337.5prime
CAGTCGACATGTCGTTTAATATCATGCAAAAGCTGACCATGCAGTGCCTG
AAGGCAGACCAGCCGCTGATGACCACCGTGCGCAATGCCAGCAAGAAAAC
CGGCGGAAGTACGAGGAATAAGAAGGGCCATGCGAGGCCCAAACATCGCG
GATGGCGCGTCCAGGATGGGCACCACGTCTCCGAGGGCACAATACTGGCC
ACCCAGCTCACAACGCGCTTTCATCCGGGCCTGAATGTGGGCTTTGGCCG
CAATGGAACCCTTTTCGCCATGGAGCACGGCAAGGTTTATGTGACCTGCG
AGGCCATCGATCCCAACTGGGACCACACCTGGATTCAGCGGAACTACGCC
GGTCGCCAGGGCCAGAACATCTACAAGAAGTTCTTCAATGTTGTGCCCGA
AAATCAGCATCAGCGATTTCGTCTAGTGGAGGAAATCGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGG
CCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACG
AAAAACATATTCTCATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCG
TAACACGCACATCTTGCGAATTTTTGTGTAGAACTGCCGGAAATCGTCGT
GGTATTCACTCAGAGCGATGAACGTTCAGTTTGCCTCATGGAAACGGGTG
TTACAGGTGAACTTATCGATATACAGCCTCACGTCTTTCATTGCAACGGA
ATTCGATGAACA
UFO09337.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL27-RC | 547 | CG33002-RC | 92..520 | 9..437 | 2145 | 100 | Plus |
| mRpL27-RB | 896 | CG33002-RB | 56..484 | 9..437 | 2145 | 100 | Plus |
| mRpL27-RA | 511 | CG33002-RA | 56..484 | 9..437 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4459007..4459207 | 437..237 | 1005 | 100 | Minus |
| 2L | 23513712 | 2L | 4459263..4459429 | 239..73 | 835 | 100 | Minus |
| 2L | 23513712 | 2L | 4459484..4459547 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:53:45 has no hits.
UFO09337.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:11 Download gff for
UFO09337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL27-RA | 56..490 | 9..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:39 Download gff for
UFO09337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL27-RA | 56..490 | 9..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:05 Download gff for
UFO09337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL27-RA | 56..490 | 9..445 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:05 Download gff for
UFO09337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4459007..4459207 | 237..437 | 100 | <- | Minus |
| 2L | 4459266..4459429 | 73..236 | 100 | <- | Minus |
| 2L | 4459484..4459547 | 9..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:39 Download gff for
UFO09337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4459007..4459207 | 237..437 | 100 | <- | Minus |
| arm_2L | 4459266..4459429 | 73..236 | 100 | <- | Minus |
| arm_2L | 4459484..4459547 | 9..72 | 100 | | Minus |
