UFO09338.5prime Sequence
1128 bp (1008 high quality bases) assembled on 2011-08-15
> UFO09338.5prime
CAGTCGACATGACAGCAATGGAGGAGTTCGCCGAGTACTATGGAATGCCC
AGCTGGAGCGTGACGAATGCGTTTCGCGTGCTCACACGCAAAAAGCCCCT
GGAGGACTCAAATGAATCCAAATTGGCCAAGGTCTTATCCGCCTTCGATC
TTACCGCCCTGGGAATCGGATCGACGTTGGGTGTAGGCGTTTACGTCCTA
GCTGGCGAAGTGTCCAAGCAATATGCCGGTCCAGCCGTGGTCGTAAGCTT
CCTCATCGCTGCCATCGCCTCGATTTTCGCCGGGCTGTGCTATGCGGAAT
TCGGAGCTCGGGTTCCAAAGGCGGGATCGGCGTACATCTACAGCTATGTG
ACCATTGGCGAGTTTATCGCCTTCCTCATCGGCTGGAATCTCATTCTCGA
ATACGCAATTGGCTCTGCCAGTGTCGTCAAGGGTTTAAGCACCTATCTCG
ATCAGCTTTGCGGCAATCCGATGAGCAGTTTCCTGGGCACCCACATGCCC
CTCAACATCGAGGGAATGGGTGCCTATCCGGATCTGTTTGCCTTCGTGGT
GACCATACTTTTTTCCCTGGCCATTGCAGTTGGAGCCAAGGAGTCCACCA
GGGTGAACAATGTTTTCACTATGCTTAATCTTGGAGTCGTGTTGTTCGTC
ATTATCGCGGGTCTTTTTAAAGTTTCCAGCAGCAACTGGTCCATTCCAAA
ATCTCAGGTACCCGAGGGCTACGGCGATGGTGGATTTATGCCCTACGGAG
TTTCGGGCATAATAAAAGGAGCTGCAGTTTGCTTTTACGGCTTCATTGGC
TTCGACTGCATTGCCACAGCTGGAGAGGAGGCCAAGAACCCCAAGAAGTC
CATTCCATTTGCTGTGATTGTCTCGCTGGCCATGATCTTCCTAGCCTACT
TTGGAGTGTCCACAGTGCTGACCATGATGCTGCCCTATTTTGAGCAGGAT
GAGATGCCTCCGCTGCCCATGTCTTCCGGAATAATTGGGTGCATGTGGCC
GAGTATGTTGTAATATTGGAGCGATGTTGAACTGTGCTCCACATGATGGG
AGCCATGTTCCCGCTGCCAAGATCGGGTTTGCCATGTCAACGATGGACTG
CTGTCCAATTCTCTCGGAAAACTACGGA
UFO09338.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5535-RC | 2040 | CG5535-RC | 114..1230 | 8..1118 | 5255 | 98.5 | Plus |
| CG5535-RB | 2147 | CG5535-RB | 256..1337 | 43..1118 | 5080 | 98.4 | Plus |
| slif-RB | 2523 | CG11128-RB | 859..1016 | 780..937 | 310 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17854339..17854708 | 412..43 | 1850 | 100 | Minus |
| 3L | 28110227 | 3L | 17853503..17853964 | 1118..663 | 1785 | 95.5 | Minus |
| 3L | 28110227 | 3L | 17854009..17854270 | 672..411 | 1310 | 100 | Minus |
| 3L | 28110227 | 3L | 22892090..22892247 | 780..937 | 310 | 79.7 | Plus |
| 3L | 28110227 | 3L | 22891558..22891723 | 248..413 | 275 | 77.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:53:49 has no hits.
UFO09338.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:12 Download gff for
UFO09338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5535-RC | 77..1200 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:41 Download gff for
UFO09338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5535-RC | 107..1230 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:07 Download gff for
UFO09338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5535-RC | 107..1230 | 1..1118 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:07 Download gff for
UFO09338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17854009..17854269 | 412..672 | 100 | <- | Minus |
| 3L | 17853503..17853954 | 673..1118 | 96 | <- | Minus |
| 3L | 17854340..17854707 | 44..411 | 100 | <- | Minus |
| 3L | 17856646..17856686 | 1..43 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:41 Download gff for
UFO09338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17846603..17847054 | 673..1118 | 96 | <- | Minus |
| arm_3L | 17847109..17847369 | 412..672 | 100 | <- | Minus |
| arm_3L | 17847440..17847807 | 44..411 | 100 | <- | Minus |
| arm_3L | 17849746..17849786 | 1..43 | 93 | | Minus |
