UFO09339.5prime Sequence
1131 bp (1009 high quality bases) assembled on 2011-08-15
> UFO09339.5prime
CAGTCGACATGGGTTCGTTATTAAAGGAGCTCGTATGCCAGATAAAAGAA
ATACAGTCCGATTTGAAGAATGACACCCATGTAGGTGCGACTAACGGGGA
ATGGAGCCGAAAAGAAGTTCGCAAAATGAAGATTTGTTTAGGGAAGGTAA
TTCTTTTCACAAGGTCCTTGAGGGAGACATTTGCGGAAAGTCAAGAGTCC
GGGAATCAAGAACAATCCTCGAAGGCTTTAGTTCTGTTACGATGTACTCG
GTACATTAAGCGCTTGTCTATGGTCCTGACACTACTTGAGACTGAAGAAG
GCTTAAATAAAGTGAATAAAACGCTCTTCCAACTGGACGTTGATACAATT
CTTTTTGAACTGGAGTGTATTGTCAAGGAGGCCTTGAAATCTCTTTCAGT
GTCGCGATTCCCGTACCAAGAGTCATCTTGTACCACTACAGAAACTTTAG
TAAAAGAAAGTCCCATTTGTGAGTTGAATAAATTGCGGCTAATGTTGAAA
AATGAGAAGAAAAAGCAGGAGCTAGAAATAATGGGCCACAATTTAATCAT
AATGAAGGAGAAAACTTTGGTTCTTCAGGCCCGTAAAAATCAAAGGGCAG
CGGAAAATAGACTAGCTGAGAAGCAGGATCGCATCAAGGCACTCGAAGAA
TGTCTAGCCAACTGCAAGTTTCAGTTGAAGAACGTCAACGAACAGTATCA
GAAATTGAAGAAAGCCAGCAATCAATTAATAAGGGAAAGTAATCAGATTA
CGCCACAGAAAAGTTGGAGTGTGCTAGTAGGGCGGAGAAAAGGCAGAATA
TCGACTAGGACCAGTTTTGTATGGAAGTCGCTTAAGCTAGATCAATCGGA
ACGGGAAACTCTTATGGGTCTAAAGAAGCGCCTTAGTGAGGAAAAGAAAT
TAAGTTGAGAGCCAGACTGAAATGAGTAAATCAGAAAGGCCATGGACGAG
CTGTGTCTTGTAAAGAGAACTTCATTTGATTACAAATAGAGTGAACAGAT
GCCAGTAGATACTGTGTCATGAATAAAGCCCTGGAGTGCTCTCCAATACA
CACGCTTAATTTTCCGGGATGCACTCATGAGCCGCCTATAGAATTCTTTT
GGCACTACTCGATCCGAATATGGATCGAAAA
UFO09339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actn3-RA | 1856 | CG8953-RA | 59..1137 | 8..1067 | 4850 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16976727..16977446 | 960..244 | 3435 | 99.4 | Minus |
| 3R | 32079331 | 3R | 16977499..16977737 | 246..8 | 1195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:53:53 has no hits.
UFO09339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:12 Download gff for
UFO09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn3-RA | 52..1143 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:43 Download gff for
UFO09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn3-RA | 52..1143 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:08 Download gff for
UFO09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn3-RA | 52..1143 | 1..1073 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:08 Download gff for
UFO09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16976598..16977446 | 244..1073 | 96 | <- | Minus |
| 3R | 16977502..16977744 | 1..243 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:43 Download gff for
UFO09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12802320..12803168 | 244..1073 | 96 | <- | Minus |
| arm_3R | 12803224..12803466 | 1..243 | 98 | | Minus |
