UFO09340.5prime Sequence
1112 bp (992 high quality bases) assembled on 2011-08-15
> UFO09340.5prime
CAGTCGACATGATGGGAGTACGACCGAATCGAAAACGTTTGGAGCTGATG
CTAATGTTGCTGATCGGTCTGGCATGGGGAATACTTCTGTCCGAGCTGAT
GAAACGAACTCGCTGGCAGAATCATGCGGATCGGCTGAAGGAGGAGAGCA
GTCCCTTTCCGAGCAGCCAGCGGAGCAGGAACCTACGCACCCCACCCACC
ATTGCTCCTTCGACCACGAATCCACCGCCGGACATCCTGGCCGCGCGACT
CTTCAACGAGACGCGTGTCCTGTGCATGGTGCTGACCAGTCCAAAGACGC
ACCACACCCGCGCCATTCACATCAAACGCACCTGGGGAAGGCGCTGCAAC
AAGCTGATCTTCATGAGCACCAAGGCGGACAAGGAACTGGGATCCGTGGC
GCTCAATGTGAGGGAGGGCTACTCCAATTTGTGGCCCAAGACCCGGGCGG
CGCTGCAGTACGTCTATAAGCACCATTTCCAGAAGTACGACTGGTTCCTC
AAAGCGGACGATGACACCTATTTTATCATGGAGAACCTGCGCGCCTTTCT
ACACGCCCACAATTTCAGGGAACCGGTTTATTTTGGAAACAAGTTCCGCC
AGCATGTAAAAGAGGGATACATGTCTGGAGGAGCTGGTTATGTGCTGAGT
AAAATGGCCCTCCATCGGCTGATTAAACTGGGTTTCAGCAACAGCAGCAT
TTGCACCAATCGCAATTATGGCTACGAGGATGTGGAACTGGGACGATGTC
TGGCCGGTGTGGGCGTCGTGGGTGGTGATTCCCGGGATGAGCAGGGGTTA
AGTCGCTTCATTCCTTTCTCCCCACTTCACTGGTATCCCCAGCCACCGGA
TTGGTACCAGCCACTACTCTACTACACATCCCCAGATAACTCCAGTGACT
GCTGCTCAAATACGGCCATCTCGTTTCACTACACAACGCACAGGAGTTCT
ACGTGCTCGAATTAATCATCTACAGCTACGATTTTTGGCATAACAGAGAA
CTTGGTCCACTGCAAAAAGAGCCAGTTCTAGGGCCATGTTCGATATTACA
GACACAAAGAGAAAACGCAATCGCTCTCATAAATGATGCCAAAGAAAACG
TCCACCAATTTA
UFO09340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2975-RA | 1884 | CG2975-RA | 524..1636 | 9..1102 | 5005 | 97.6 | Plus |
| CG34056-RA | 1303 | CG34056-RA | 412..475 | 328..391 | 185 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2840994..2841502 | 9..517 | 2545 | 100 | Plus |
| 2L | 23513712 | 2L | 2841820..2842094 | 613..887 | 1375 | 100 | Plus |
| 2L | 23513712 | 2L | 2841563..2841664 | 518..619 | 495 | 99 | Plus |
| 2L | 23513712 | 2L | 2842157..2842291 | 888..1018 | 430 | 94.8 | Plus |
| 3L | 28110227 | 3L | 896362..896425 | 328..391 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:53:58 has no hits.
UFO09340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:13 Download gff for
UFO09340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2975-RA | 517..1638 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:45 Download gff for
UFO09340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2975-RA | 517..1638 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:11 Download gff for
UFO09340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2975-RA | 517..1638 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:11 Download gff for
UFO09340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2840987..2841502 | 1..517 | 99 | -> | Plus |
| 2L | 2841563..2841659 | 518..614 | 100 | -> | Plus |
| 2L | 2841822..2842094 | 615..887 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:45 Download gff for
UFO09340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2840987..2841502 | 1..517 | 99 | -> | Plus |
| arm_2L | 2841563..2841659 | 518..614 | 100 | -> | Plus |
| arm_2L | 2841822..2842094 | 615..887 | 100 | -> | Plus |
