UFO09342.5prime Sequence
1130 bp (1034 high quality bases) assembled on 2011-08-15
> UFO09342.5prime
CAGTCGACATGGCTCGGCCGAATCCAGGTGCACCCGTGATGAGAGGCGAT
GACATCTATTCGCGGGTGCACTCCGCCACCCCTCTGCCCCTGCCCCTACA
CCTGGTCCTCCTGCTCTTCCTGCTCGTGCTGCAGCTCCTGGCACCGGCTG
CAGCGACTCCCGTGAATCCCTGTCCCCACAAGGGCATGGCCGAACTGATT
CGCAACAGTCCGGTAATTGTCAAGGCCCTCGTCGCACGGATCTTCGCCGA
TGAGCCGGAGGGACCGGTGCAGTCCCTCGCACAGGACACGATTTTAATAA
CATTAACGCCGGAAACGATATACAAGGGTGCCTCGCTGCTGAAAGTGGCC
AACGGCAATACCGATGCCGGGAATCCCATGTCGCCGAGGGTGGGAGGTCT
CATGTCCTGGAGCTCGGGCCATCGCAGCAGAGGTGGCAGCGCTGGATCCG
CGGGCAGCGGTGGCACCTGGAGTGGCGCTGAGTCAGCCTTTCAGTACGAG
GGGCAGTTGAATGCGACCCTCCAGCCACTGCGTTGTTTCGATAATAACAT
GCTGAAAATGCTGCCGGCGGAGTTAATTGCCTTTGGCAAACTGCTGCCCG
CTGCGACGGCATCCACCGGAGGCAGTCCGCAGACCGCACGACAGCTTCAA
CGACCGCCCGTGGGTGGCGCCACCGATGTGCTGCAAGTCAGCGTCAACGG
TCTGCATCGCTGGACGCCGCAGTTCGAGAATCATATCTGGAAGCATTTGG
GCTGGGACGATTGGAGCGACTTCACCTTGTGCAGTGTCACCTGCGGTCAG
GGGGTGCAGCAGCGTTTCCGGCGCTGTCTACTCGACAATCCGCTGGGGAC
ATCAACATGAACATCAATCTGGAGGAGGACGACGACGACGACGACGAGGA
TGACAGGCTCAGGGTGCAGACGATGCGGGCGCAGTTGCCCACTGTCCAAG
GAGACGGACGTTTTCGGCGATGGCACACGATCTGCTGGCAGATGAGATGA
AACGAGCTGCTCATATGGCGAGCAGGTGGCGACGAGTCATTGCATTAATT
TGACAGCAACGACGACGATTACGCCGGCAAACCATGGTCCTGTGCCAATG
CCATCCGAACTCCAGCTTCCGGACTGAATC
UFO09342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12594-RB | 3469 | CG12594-RB | 902..2017 | 8..1115 | 5140 | 98 | Plus |
| CG12594-RA | 3364 | CG12594-RA | 797..1912 | 8..1115 | 5140 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11727192..11727687 | 8..503 | 2480 | 100 | Plus |
| 3R | 32079331 | 3R | 11727784..11728033 | 502..751 | 1250 | 100 | Plus |
| 3R | 32079331 | 3R | 11729282..11729617 | 750..1076 | 1210 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:54:02 has no hits.
UFO09342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:14 Download gff for
UFO09342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12594-RA | 723..1822 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:48 Download gff for
UFO09342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12594-RA | 793..1892 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:13 Download gff for
UFO09342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12594-RA | 793..1892 | 1..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:13 Download gff for
UFO09342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11727188..11727686 | 1..502 | 99 | -> | Plus |
| 3R | 11727785..11728032 | 503..750 | 100 | -> | Plus |
| 3R | 11729283..11729635 | 751..1096 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:48 Download gff for
UFO09342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7552910..7553408 | 1..502 | 99 | -> | Plus |
| arm_3R | 7553507..7553754 | 503..750 | 100 | -> | Plus |
| arm_3R | 7555005..7555357 | 751..1096 | 94 | | Plus |
