UFO09345.5prime Sequence
1140 bp (1017 high quality bases) assembled on 2011-08-15
> UFO09345.5prime
CAGTCGACATGAGACGATGCAAGACAATTCAAATGCTGTTCCTCTGTTTG
ATGATGAGAATGCGAGAAAGTCATGAGCGGCCCACGCCGAAAAATCTGCT
GGAACAAATGCTGCCTGCTGACACCTTTGACGTTATCCGGAGAATACCTC
GCTCCGATGAACCCGGTCCGGATGCCAAAGGGGACCTGAAGCTGTTGCAT
GCTCCCTGCGAGTTTGACTTGATAAGATACACATCGATTAACCACTATCC
CATTTATTGCCTGCCCGTCTACACAAATCGGCACGTGAACGAGGACTGGT
ATCGACTTTATAGGACCTACGACACCGAGGGATTTGTTTTCGGGCAGTTT
TACGAGCGTCTCCAGCGGTACGAGTTGGACGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACA
TATTCTCAATAAACCCTTTAGGAAATAGGCCAGGTTTTCACCGTAACACG
CCACATCTTGCGAATATATGTGTAGAACTGCCGGAAATCGTCGTGTATTC
ACTCAGAGCGATGAAACGTTTCAGTTTGCTCATGGGAAAACGGTGTAACA
AGGTGAACAACTAATCCCATATTACAGCTCACGTTCTTTCATTGCCCTAT
CAAAATTCGGATGAGCATTCCTCAGCGGCAAGAATGTGAATAAGCCGGAA
AAACTGGGGCTAATTTTCTTACGTCCTTAAAGGCGTAATA
UFO09345.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34234-RA | 603 | CG34234-RA | 11..383 | 8..380 | 1865 | 100 | Plus |
| Dh44-R2-RB | 3069 | CG12370-RB | 2022..2349 | 380..53 | 1640 | 100 | Minus |
| Dh44-R2-RB | 3069 | CG12370-RB | 2406..2451 | 53..8 | 230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12486939..12487266 | 380..53 | 1640 | 100 | Minus |
| 2R | 25286936 | 2R | 12487323..12487368 | 53..8 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:54:12 has no hits.
UFO09345.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:15 Download gff for
UFO09345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34234-RA | 11..389 | 8..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:52 Download gff for
UFO09345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34234-RA | 11..389 | 8..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:17 Download gff for
UFO09345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34234-RA | 11..389 | 8..388 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:17 Download gff for
UFO09345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12486939..12487265 | 54..380 | 100 | <- | Minus |
| 2R | 12487323..12487368 | 8..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:52 Download gff for
UFO09345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8374444..8374770 | 54..380 | 100 | <- | Minus |
| arm_2R | 8374828..8374873 | 8..53 | 100 | | Minus |
