UFO09351.5prime Sequence
1127 bp (1006 high quality bases) assembled on 2011-08-15
> UFO09351.5prime
CAGTCGACATGCGCGCGTGTGTATGTGTTTGCGTGCAGTGCGAAATAGAA
ACAAGAAAAGCAAGCGAAAAATCACAGAAATTCACAAAAAAAAAGCCCAA
CTACTTCCAAAATTGGGCCGCCCGGCGAAGAACCGCAAAAGTGGCCAAAA
TTCGGCGAAAACAGCGCAAGTGTGACAAAGCATTCGTGCCGCTGCAGTCG
TCGGCGAAACGGGCGAAAACAAAAGAGAATAGTGTTGATAGTAATACGAG
CGTATTTAGCAGTAGCAGCAGCAGCAGCAGTGGCCGAAGCTTCGGCAGGG
GAACGGAACGGTGGGCGGTGGGTGCAGAAGCGGGCCGGGGAACGGCCGAG
AACGAAACACTAGCAGTAGCAGCAGCAGCAGCGACAACAACAAATGCCGG
TCGCTTTATCACCGCCGATCTAATCAAAACAGTTAACAGCGACAAGCAGC
GAGACAGAGTAGCAAAGGGCCACAGGGACGCGAAAAACCCCCTAGATGCC
ACCAAACATTTGCGCCTATCGGACTGCTTGCGTACCGTGCAAAAACTTGC
TATTGAACTTGAGAGCGCCGACGCCGGCAGCGACGCCAGCGCCCAAGCCA
ACGCTAGCGCCGACGCCAGCAGCGCCGTCATGTCCGAGACGGGTTGTCGG
CACTATCAAAGCTATGTGAAGGAGCACAGCTACGATACATTCCGGGTCAT
CGACGCCTACTTCGCTGCTTGCGTCAACAGAGATGCGCGCGAGCGAAAGG
CTATTCACTGCAACTGCTTCGAGTGCGGCAGCTACGGCATCCAGTTGTAC
GCTTGCCTGCACTGCATCTACTTCGGATGTCGGGGGGCCCACATCACGAG
TCACCTGCGATCCAAGAAGCACAATGTGGCCCTGGAGCTGTCCCACGGAA
CGCTCTACTGCTACGCCTGCAGAGATTTCATCTACGACGCGCGGAGTCGC
GAGTATGCGCTGATCAACCGCAGCTGGAGCGAATGATCTGCAGAAGAGCA
TCGGCTGGCTGCGTGGGTCCCACACCAGGAGACCAATCTGCTGCTGGCAT
GCCAGCGTCGGCTGGTGAGCCAATCAACGATCGAACTGGAGGTTGCTAAC
TGGGCCCCTGCTTCATGACTGCATCGT
UFO09351.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
not-RC | 2989 | CG4166-RC | 18..1156 | 9..1127 | 5145 | 97.7 | Plus |
not-RB | 2488 | CG4166-RB | 18..1156 | 9..1127 | 5145 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18621371..18622112 | 750..9 | 3710 | 100 | Minus |
3L | 28110227 | 3L | 18620528..18620834 | 1048..748 | 1225 | 97.1 | Minus |
Blast to na_te.dros performed 2014-11-26 23:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2476 | 258..392 | 155 | 58.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2451 | 265..413 | 151 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2374 | 324..392 | 138 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1120..1158 | 354..392 | 123 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2657 | 354..393 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6842 | 356..479 | 119 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2488..2525 | 356..393 | 118 | 78.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2377 | 356..392 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6849 | 354..464 | 113 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6831 | 356..392 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6896 | 354..488 | 112 | 57.6 | Plus |
UFO09351.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:19 Download gff for
UFO09351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
not-RB | 15..1114 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:05 Download gff for
UFO09351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
not-RB | 13..1112 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:26 Download gff for
UFO09351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
not-RB | 13..1112 | 1..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:26 Download gff for
UFO09351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18620479..18620832 | 750..1092 | 95 | <- | Minus |
3L | 18621372..18622117 | 1..749 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:05 Download gff for
UFO09351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18613579..18613932 | 750..1092 | 95 | <- | Minus |
arm_3L | 18614472..18615217 | 1..749 | 99 | | Minus |