UFO09352.5prime Sequence
1121 bp (1016 high quality bases) assembled on 2011-08-15
> UFO09352.5prime
CAGTCGACATGCGACCCTGGATCTTGACATCCTTCACCGGGGTGGGGACC
AACTTTTGCTCCGGGGTAGGAATGGCTGTGGCGGCGGCCACGGCCAGAGC
CAGGAATACGAACCTCGAACGCGACACCATGTATTTGCTTGTGAACTTCA
TCGTTGCGCTGGCCGTGCTGCAGGTGCAAGCCGGCTCATCCTACATTCCG
GACTCGGATCGCAACACACGCACCCTGCAGAACGATCTGCAGGTGGAGCG
GGATGGCAAGTATCGGTATGCCTACGAGACCTCCAATGGCATTTCCGCAT
CGCAGGAGGGATTGGGTGGCGTGGCCGTACAGGGCGGCAGTAGTTACACA
TCACCCGAGGGCGAAGTAATTAGTGTGAACTATGTGGCCGATGAGTTTGG
CTATCATCCCGTGGGCGCACATATACCCCAGGTGCCGGACTACATACTGC
GCTCCCTGGAGTACATTAGGACGCATCCCTACCAGATCAAGGACTACTAC
ACCGGGGAGCTGAAGACCGTGGAGCACGATGCAGCCGCCTTTAATGTGTA
CACACGCAACATTCAGGATCATACGATCCCCCAATCCCGACCGAGCACCA
CGCCCAAGACCATTTACCTCACCCATCCGCCCACGACCACGTCGCGACCT
CTGCGCCAAAGACGAGCTCTTCCGACGCACGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
ATTCATTAGGCATTCTGCTGACATGCAGCATCACAAACGGCATGATGAAC
CTGATTCGCAGCGCATCAGCACTTGTCGCCTTGCGTATTATTATTGCCAT
GCTGAACGGGGCAAGAGTGTCATATTGGTCAGTTAATTCAAACTGGTGAA
TCTCTACTCCATGAATTGCCT
UFO09352.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcp-RA | 718 | CG3440-RA | 19..585 | 114..680 | 2835 | 100 | Plus |
Jon99Fii-RA | 913 | CG2229-RA | 34..138 | 113..9 | 525 | 100 | Minus |
Jon99Fi-RA | 933 | CG18030-RA | 36..138 | 111..9 | 485 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7021798..7022337 | 141..680 | 2700 | 100 | Plus |
3R | 32079331 | 3R | 30487791..30487895 | 9..113 | 525 | 100 | Plus |
3R | 32079331 | 3R | 30488998..30489100 | 111..9 | 485 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:54:44 has no hits.
UFO09352.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:19 Download gff for
UFO09352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcp-RA | 13..585 | 108..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:07 Download gff for
UFO09352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcp-RA | 13..585 | 108..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:28 Download gff for
UFO09352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcp-RA | 13..585 | 108..680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:28 Download gff for
UFO09352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7021694..7021726 | 108..140 | 93 | -> | Plus |
2L | 7021798..7022337 | 141..680 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:07 Download gff for
UFO09352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7021694..7021726 | 108..140 | 93 | -> | Plus |
arm_2L | 7021798..7022337 | 141..680 | 100 | == | Plus |