UFO09354.5prime Sequence
1132 bp (1022 high quality bases) assembled on 2011-08-15
> UFO09354.5prime
CAGTCGACATGGGTTTATTACAAAAGTTGCGGAGGCAAATGTTGACAAGC
GTTAACCCCAGAAAGGTTGAAGGTCGAAAAACTATAAAGTTCAATCTCGT
TGCGAAAAGCAAAAGTCACTCGGGCATATCAGCACCCATCGGCCTTGGCC
CCCAGCTACCACCCCTTCCCCTCGGCGGCGGTTTTGTTAAGTTGCGTCAT
GTAGCCAAGGAGGAGGATACCAGTAGCAGCAGCAACACATCCTCCGCCAA
GGAATCGCCAGATAAGAAGGATCTTCGCCAGGAGCAGGCAGAAGCTTCGG
GAGACTCATCGCACCCAACGGCTCTGCCACAGTTTCTTCAAGGCGTCCAA
CGATCATCAACCGAGGTCATGGGCCCCGATCAGCGGTCTTTGGTGATTTC
GAAGACCGGCTCCATTGCGGAGCGTTTGGCGGCACTCCACAAAAGTGGCG
AGGACGACTGGAAGAAGCGCATCTCGAAGCGCGACGAAGTCGACGATGTG
CACCGTGAAAACTTCGTAAACGAATCGCTATCTTTGGCCCACTCGCTGTC
GGACAAACCACTGCCCCCATCACCTTTGATACCCACCAGCTTGGAGGGCG
GCAAGGTCTCCGATCGTTTGAGCAAACTCAAGTGCAACTCGGAGAACTGG
AAGCAGCGCATAGAGCAAACCGATGCCAAGAAATTCACAGTCGCCGGTCG
ACTGCAAAAGAAGGCCCAATCCCCCGTGGAGCTTCAATTCGAGCGTTCTG
CCAATGATGCGGCCAAAAAGTGTCCCATGCTGGAGGTGCGCAGCGCCAAT
CAGCCGCAGCTTGGGCTGGCCAAGAGCCCCTCCATGATGGTCACCTCTAG
CACCAGCACCAATAGCACCAGCAAGTCCGCACTCCGCAGCCTGAGCGTCA
ATCCCGAGGAGGAGGGACCCACCAGCCTGAGTCGCTCCAACAGCAGCAGT
TCGGAGTCCGATGGAGAGCGCAATCCCCCCAGATGCAGCAGACAGGAGCT
GGCAACAACAAGAGTGCTGCAGCCACCCACAATGTGGGGAGCCAGGGATT
CAGGTGCCCCGCCTGACGACAGAAACTTCAGAAACTCTCTCTCCTCAAGC
GGAAAGAGAGGAACGTCACTGATACCGCTCGA
UFO09354.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45186-RZ | 4447 | CG45186-RZ | 118..1113 | 91..1078 | 4650 | 98.5 | Plus |
CG45186-RAE | 14937 | CG45186-RE | 10609..11603 | 92..1078 | 4645 | 98.5 | Plus |
CG45186-RY | 4738 | CG45186-RY | 410..1404 | 92..1078 | 4645 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2495217..2495625 | 662..1065 | 1585 | 96.4 | Plus |
3L | 28110227 | 3L | 2484564..2484839 | 92..367 | 1380 | 100 | Plus |
3L | 28110227 | 3L | 2485071..2485229 | 364..522 | 795 | 100 | Plus |
3L | 28110227 | 3L | 2495011..2495152 | 522..663 | 710 | 100 | Plus |
3L | 28110227 | 3L | 2480744..2480812 | 23..91 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:54:54 has no hits.
UFO09354.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:21 Download gff for
UFO09354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33232-RA | 1..1066 | 22..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:11 Download gff for
UFO09354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33232-RA | 1..1066 | 22..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:30 Download gff for
UFO09354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45186-RZ | 115..1113 | 86..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:30 Download gff for
UFO09354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2495219..2495641 | 664..1078 | 96 | | Plus |
3L | 2484564..2484837 | 92..365 | 100 | -> | Plus |
3L | 2485073..2485228 | 366..521 | 100 | -> | Plus |
3L | 2495011..2495152 | 522..663 | 100 | -> | Plus |
3L | 2480742..2480812 | 20..91 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:11 Download gff for
UFO09354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2480742..2480812 | 20..91 | 98 | -> | Plus |
arm_3L | 2484564..2484837 | 92..365 | 100 | -> | Plus |
arm_3L | 2485073..2485228 | 366..521 | 100 | -> | Plus |
arm_3L | 2495011..2495152 | 522..663 | 100 | -> | Plus |
arm_3L | 2495219..2495641 | 664..1078 | 96 | | Plus |