UFO09355.5prime Sequence
1109 bp (1009 high quality bases) assembled on 2011-08-15
> UFO09355.5prime
CAGTCGACATGAACAGCTTAGTGCGACGCAGCGCCCAGCAGCTGAGCCTC
TGGCGTACATATTGCATAAAGCACAATGCTTCAGAGGCGGCTTCTCCCGG
ACGGAACGCAGGCAGGCCCAACTACGAGGAGTTCATTGGCCGTCATCAGC
GACAGGCCCAGTGCAGCATTGTGGTCCAGGTGAGCTCCGAAAAGTCGTAT
GAGGAGTTGTATAACTACTGCAGCAGCTTCGGCTCGATCATGGGTGCCCA
CCACTACTGCGTGCGGCAGGACGAGGCCCTGCACTACATCCTGCTGGAGT
ACGCCACGTCGGACGAGGCGGCGGCTGCCATCGGAGCGGGCGTTACCAAT
GGCGAGCTGAGCGGCGTGCCCGTGCGATCTCCCTTTCTGTGGTTCCGGGC
AGCGGGAGGAGGCAGACGGAGCCCCAAGCTAGTTGCCAATACAGCGCCCG
CACTGCTATCCTTGGACGGCACCCGGCAGGTGGATCAGCGCCACCTACTG
GGGCTCTTACGTGGTGCAGCGGACATCGAAGAGCAGGTGCAGCAGCTGTA
CGAGCACACGCGCCTGAATGAGCTGGGAATCCGTATGCGCTTTCTAGCCG
CCCTACAGGTGCAGCAGGCCATTGCCGGCATGTTTCCCGCCGCCCAGGCA
CAGCCCTTTGGCTCGTCGGTCAACGGATTTGGGCGAATGGGCTGCGACCT
GCACCTCATCCTGCGCTTTGACAGCGATATGGGAGCTAAGATCCCACTGG
AGGCGGCGGTGCCCTCGCGACTCGTGTACCACACCAAGGAGAACCTGAGC
AACGGACGCTCGCAGACGCAAAGGCACATGGAATGTTTTGGAGATATGCT
GCATCTGTTCCTGCCCGGCGTGTGCCATGTGAGACGTATTTTTGCAGGCG
AGGTGCCCATCATCAAGTACCACCATGAGCATCTGGACCTGAGGTGACCT
CTCATGAGTAACCTCCACTGGCTTTATATGTCGCACTGCCTTACATGTTC
CGGTGAATTGATTCGCGCGTACGGGCGGTTGATCCTTAACAATCGACGCA
TGGGCGCAAACTGCGGCCTCCGAATCCCCTCGCCCTGATCGCTTGAACGA
AACTTCAGC
UFO09355.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11418-RC | 2243 | CG11418-RC | 111..1198 | 8..1093 | 4865 | 97.3 | Plus |
| CG11418-RA | 2319 | CG11418-RA | 111..1198 | 8..1093 | 4865 | 97.3 | Plus |
| CG11418-RB | 1374 | CG11418-RB | 126..253 | 966..1093 | 235 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1348248..1349080 | 941..109 | 4040 | 99.5 | Minus |
| X | 23542271 | X | 1349143..1349247 | 112..8 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:54:58 has no hits.
UFO09355.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:21 Download gff for
UFO09355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11418-RA | 102..1145 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:14 Download gff for
UFO09355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11418-RA | 102..1145 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:33 Download gff for
UFO09355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11418-RA | 102..1145 | 1..1040 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:33 Download gff for
UFO09355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1348222..1349077 | 112..964 | 99 | <- | Minus |
| X | 1349144..1349250 | 1..111 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:14 Download gff for
UFO09355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1242255..1243110 | 112..964 | 99 | <- | Minus |
| arm_X | 1243177..1243283 | 1..111 | 96 | | Minus |
