UFO09356.5prime Sequence
1081 bp (981 high quality bases) assembled on 2011-08-15
> UFO09356.5prime
CAGTCGACATGAGTGTCTGGATGAGCGGGCCCCGAAATTTCGCACTAGCC
ACACAAATTATACGGGAAACTATGAGTTTGCACTACGCGGAATCGGAATC
TTCGCCGTCAGAGAGCAAAATGGACATCTCGGAGACGCCGACGGACTCAA
CGGGCGTCTCGCCGCTGGCGGATGATGTTTTGCCCACCGCGCCGGAGAAG
AATATCCTGAAATTGGAGCAGGCCAAGCAGGATCACGATAAGGAGGAACT
GGAGTTCAAGACGACCTCCGCGCTGGACAACAGAATACTGCGTCCAGAGC
TGCTGCCCATGGAGGCGATGCCACAACGACACAACATCATCGAGCGCACC
CTGGCCAACAGCCATCCGCTGATGTCGCCAACCAACACGGACTCAGACTC
GGAACCCTTTCAGCTGAAGAAGCAGGAGAAACAGCTGCCGAGGAGCAACT
TTCCGGACGTTGTGCCCACCACGGAGACGGTGCAGGTGAAGAACAACCTG
AACCAATGCCGGAACAAGCCGCAGGACGCCAAGGTCAGCCTGCTAAGGGC
CAACAGTCCGGATATCCTGAGCAGCGAGTCAGATGCGGATGTGTCCCAGT
ACTTGGCCGCCGTGGAGTCTAACTTTCAGTCCGTTTCCCTGATGCCCAAT
GGCAATGGCAAGAAATCCAAACGATCGACTGCACTCCCTGGTGGCGAGGA
CATATCTAGCCTGGATTCCATCTCCAATCACAGCTTCGACGATGACGAGG
ACATTGAGCACAATTTGGCCTCTCTAAGTCCATCGAGCTCCCTGATTGAT
GGCTTAGACGGAGAGGATGACGACGACGACTGCGAGGGTCCGGAACTGCT
GCCCGACCACGACGACGACTTGGAACTGGACCTGGAGTTCGGTTTGGCCA
CACGCCCACGCCAAATGCTCCGGCATCGGCTACGGCTGCCTCACTCTGCA
CAGTATACGGCTGCTGAAGAGAGACGTGATTCGCGGATGGCAGAAGATCA
CTTACCGGATGACGCCTAGAGATCGACATGCGGTCATAGAGCTACATGCG
TGTGCTGTCCCACAGCGGCTATCTCATCTGC
UFO09356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11593-RC | 2582 | CG11593-RC | 129..1209 | 9..1076 | 5050 | 98.4 | Plus |
| CG11593-RB | 2773 | CG11593-RB | 320..1400 | 9..1076 | 5050 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4039019..4040033 | 1076..75 | 4490 | 98.2 | Minus |
| 3L | 28110227 | 3L | 4040096..4040163 | 76..9 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:55:03 has no hits.
UFO09356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:22 Download gff for
UFO09356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11593-RB | 313..1404 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:16 Download gff for
UFO09356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11593-RB | 313..1404 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:36 Download gff for
UFO09356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11593-RB | 313..1404 | 1..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:36 Download gff for
UFO09356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4039011..4040031 | 77..1081 | 98 | <- | Minus |
| 3L | 4040096..4040170 | 1..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:16 Download gff for
UFO09356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4039011..4040031 | 77..1081 | 98 | <- | Minus |
| arm_3L | 4040096..4040170 | 1..76 | 94 | | Minus |
