UFO09359.5prime Sequence
1067 bp (932 high quality bases) assembled on 2011-08-15
> UFO09359.5prime
CAGTCGACATGTACAATAGTTTATATTTATATCGAAATCTGTGCAAAATG
TCGTTTGTTCCAGAGACTTTTATTATTTATGGCTTTTTATGGAGCTTGGT
GGTTTTCCCAGCTTTCGCTAATTTTTCCCTCTACAACTACGGGGATTCAG
CCTATCCCAATTGCTGTGTTCTCGATATTGACTCAACGCGGATACTGCTT
AAAATGGGTCAGAAATTTCGCCCAAAATTCCTGCCCTGCACGACAATTTT
ATGCATTGGCGATGGATATGGAATGCTGTTTACGTGTGATAAAAAGGAAC
CACCAGAGCACTGTCACTTTAAGGATTATTTGAATGGGGATGCCAATTAT
CCAGATTGTTGCTACCGCAAACTTGAGTGCGACGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTATGTGTTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCC
ACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGCTGAGACGAAAA
ACATATTCTCAATAACCCTTTAAGGAAATAGCCAGGTTTTCACTGTAACA
CGCCACATCTTGCGAATATATGTGTAGAAACTGCCGAAAATCGTCATGGT
ATTCACTCCAGAGCGATGAAAACGATTCAGTTGCTATGGAAAACCGGTGT
ACATAGAGTGAAACTATCCCAATACACCCACGTCTACCCGTCTTTCTATT
GGCAATCCTGAAATTCA
UFO09359.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34178-RC | 492 | CG34178-RC | 14..388 | 9..383 | 1875 | 100 | Plus |
| CG34178-RB | 940 | CG34178-RB | 462..836 | 9..383 | 1875 | 100 | Plus |
| CG34178-RA | 882 | CG34178-RA | 404..778 | 9..383 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4434428..4434569 | 9..150 | 710 | 100 | Plus |
| 2L | 23513712 | 2L | 4434616..4434755 | 146..285 | 700 | 100 | Plus |
| 2L | 23513712 | 2L | 4434854..4434953 | 284..383 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:54:20 has no hits.
UFO09359.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:16 Download gff for
UFO09359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34178-RB | 455..848 | 1..396 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:56 Download gff for
UFO09359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34178-RA | 397..790 | 1..396 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:20 Download gff for
UFO09359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34178-RA | 397..790 | 1..396 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:20 Download gff for
UFO09359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4434421..4434569 | 1..150 | 97 | -> | Plus |
| 2L | 4434621..4434753 | 151..283 | 100 | -> | Plus |
| 2L | 4434854..4434953 | 284..383 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:56 Download gff for
UFO09359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4434421..4434569 | 1..150 | 97 | -> | Plus |
| arm_2L | 4434621..4434753 | 151..283 | 100 | -> | Plus |
| arm_2L | 4434854..4434953 | 284..383 | 100 | == | Plus |
