UFO09360.5prime Sequence
1057 bp (858 high quality bases) assembled on 2011-08-15
> UFO09360.5prime
CAATCCACATGCCTTTCCGGGCCGAACACGAGGCATAGGACGAGAAGGTG
CAGATCACAGGTCCGGAGGACAACCAACACCAACAAAACAACAACAACAA
CGATTGGGAGCCGAACAGGATGGTGCTACCGTTTGGACTTGGACCCGATG
GCCATCACGTGGATGCCATTCAGAGTGCTCCGGCGCCCAGTGCGCCCCCC
GCCCACATGATGCCACCAGCCTACGCCCGGGGACAAACAAACATATACAC
AGGTGTTCCGATCATCGTGAATCCCTACATAGACTTCATCGTGGTCAACG
GGGATGATCGATACATGATCAGATGCGAACGAAAGTCGGTACTCGAGCGG
AGCGTGGAGCTGGCCAAGCTTATCCACGCCGGTCCGAACAGCGGTCGCAA
GAGCGACAATCATTTCCAGATACTCAACGTGGACAAGAACGACTTCGAGC
TGATCGTCCGCTACATGGAGAAGCACTTCATTCCCTACCGCGATCACAAG
CACCTGCTCAAGATACTGGAGCTATCCGATCGCTTCAACGTTCCAGATCT
GATAATCTACTGCATTCGCGAACTTGATCTCAGAATCTCGAGCGCCACGG
CACTGGACATCTTCAAGGCGCTGTGGTTCTACCAGGGCATCGCACTGACC
AACCAGCACCAAACGGTGATCACCACCCAGGAGACGGGCCAGCAGCTGGC
CAGGAAGAATGCGACCAAGGCGAAGGCGGCGGCCAAGCAGCTGGCGGCTG
CCAAGGCCTCTCAGTCCACCGAAAACGGATCGGAGGGCGATGGAGCCCAG
CAGAACCTCATTCCTAACCCACATCCCTATACAACGAAGATTACGGCGTG
ACGCTGCTGCACTACACGCTCCAGCTGATCGATATGCGCGCAGAGCTGCA
GCTTTCGATGCCGGAGATCAGTGATCTCAGGGTTCTAGGACCTGGAGACG
CTGGTCAGAGGGATACCATGCAGCTCAGGTCGGAAGTCACTTCTGGTTCC
ATGGCCTGGCACGTGGAGCCTGGGAAGTGTCCGCTACATATCTATGCCAA
CCCGGGA
UFO09360.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8398-RE | 1911 | CG8398-RE | 328..1321 | 30..1023 | 4565 | 97.6 | Plus |
CG8398-RD | 2094 | CG8398-RD | 511..1504 | 30..1023 | 4565 | 97.6 | Plus |
CG8398-RC | 1850 | CG8398-RC | 267..1260 | 30..1023 | 4565 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6616075..6616600 | 30..555 | 2600 | 99.6 | Plus |
3L | 28110227 | 3L | 6616666..6617107 | 551..991 | 1870 | 96.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:54:25 has no hits.
UFO09360.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:17 Download gff for
UFO09360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8398-RD | 505..1490 | 23..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:58 Download gff for
UFO09360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8398-RC | 261..1246 | 23..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:22 Download gff for
UFO09360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8398-RC | 261..1246 | 23..1010 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:22 Download gff for
UFO09360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6609382..6609404 | 9..29 | 91 | -> | Plus |
3L | 6616075..6616596 | 30..551 | 99 | -> | Plus |
3L | 6616667..6617107 | 552..991 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:58 Download gff for
UFO09360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6602482..6602504 | 9..29 | 91 | -> | Plus |
arm_3L | 6609175..6609696 | 30..551 | 99 | -> | Plus |
arm_3L | 6609767..6610207 | 552..991 | 96 | == | Plus |