UFO09372.5prime Sequence
1090 bp (1009 high quality bases) assembled on 2011-08-15
> UFO09372.5prime
CAGTCGACATGCACCAAAGCAAACGCTCCAGCGAAATGTGGAATCAATAC
CGAAACCAAAACCGAAACAAAAACCAAAGTCAAGGATCCAGTGGAGTCAC
CCGTCGTCCAACGATGGGGCGGAACAAAGGAGCTGCCGCCGGATCACGAG
CACTCAACTGTGGCCTGTTGATGCTCCTGCTGCTCCTCCAGCTGGTGGGT
GAGCGCCTGGCGACGCCATCGCCATCCTCCATGCAGGCGCCACAGAAACG
AGGTGGCAGTGGCAGCGGAGGTGGAGGCGGCGGCGGAGGAGGCGGCGGTG
GAGGCGGTGGCAGTGGCAGCTCGTCGGACGTATCGAGAGATCACTGCAAC
AAGACGGTGGACATCTTCGAGGACATCAGCTCGCCGGAGGTCAGCAACCA
GAACGTGGGTCGTCCGCTGACCTGCTGGTACCGCTTCCGGACGCTGAAGG
GAGCGCCCCGCGACTTTGTGCTGCGTCTGCGATTCAAGAAGTTCAAAGTG
GGTCAGCTGCTGAATGCAACCCACTGCGAGGGCGGCTACTTGCAGATTGT
TGATGGCAATGCCAAGACGGATGTCTCGAATCGCCGAGAGCCCGGAATGT
TTTGCGGGGAGGCGGAACAGCCGCAGACATTCATCAGCGAGACCAGCTAT
GTGAAGGTGCTCTTCCACACGGACAACTTTACGGATCAGACCTACTTCAC
ATTCGATTCACGCGCGGAACAGCAAACCGAAGTCTATCTGCGATATGGCC
AACATCCGGAATTATATCCAAATCGTCGCGGCGAAGTTGTTCAAGGCTCC
TACTGCGAACGCGAGTATCGAGATTGTCGCCTGCAGACCTGTTACGTTCA
ATCGCCCGCATATCCTGGCCTATATCCTCGGGCCCTGAATTGCCGCTATA
AGCTGCACACTCGCCAGCCATATATCAATTGTAATCTGCAGAATGAGCAG
TTTGCAGTGGATGGTCAAAGGTGGTGGAGATGTGATGACCTGCCCCATCA
GGCCGATCGGGATCTGGTTATGAGACACTGTCCCTACGACTGGTGGGCCG
TATACGATGGAGTATGGCACTCGCCCCCTCAATGGGAGTC
UFO09372.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34370-RH | 4294 | CG34370-RH | 158..1235 | 9..1087 | 5085 | 98.6 | Plus |
| CG34370-RG | 4377 | CG34370-RG | 241..1318 | 9..1087 | 5085 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22004983..22005277 | 545..251 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 22037390..22037635 | 254..9 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 21998799..21998975 | 972..796 | 825 | 97.7 | Minus |
| 2R | 25286936 | 2R | 22004708..22004857 | 689..540 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 22000700..22000809 | 796..687 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 21995022..21995101 | 1061..980 | 280 | 95.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:49:31 has no hits.
UFO09372.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:35 Download gff for
UFO09372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34370-RG | 240..1311 | 9..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:39 Download gff for
UFO09372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34370-RG | 241..1312 | 9..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:29 Download gff for
UFO09372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34370-RG | 241..1312 | 9..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:29 Download gff for
UFO09372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22000700..22000806 | 690..796 | 100 | <- | Minus |
| 2R | 22004708..22004851 | 546..689 | 100 | <- | Minus |
| 2R | 22004983..22005275 | 253..545 | 100 | <- | Minus |
| 2R | 21998801..21998974 | 797..970 | 98 | <- | Minus |
| 2R | 22037392..22037635 | 9..252 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:39 Download gff for
UFO09372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17888205..17888311 | 690..796 | 100 | <- | Minus |
| arm_2R | 17892213..17892356 | 546..689 | 100 | <- | Minus |
| arm_2R | 17886306..17886479 | 797..970 | 98 | <- | Minus |
| arm_2R | 17892488..17892780 | 253..545 | 100 | <- | Minus |
| arm_2R | 17924897..17925140 | 9..252 | 100 | | Minus |
