UFO09373.5prime Sequence
1135 bp (1029 high quality bases) assembled on 2011-08-15
> UFO09373.5prime
CAGTCGACATGTTTTGGAGTCCAATTATGGGCGATAACTCCGGCGAATCC
GAATACGTCGAAAATAATAGTGTGTATAGTTCAATCACGAGGCTTTTAAA
ACTTTTAGAAATGGAGGAAATCTTCATAACGAACATTAAGGCATACACCA
ATAAGTTGGCCGAAAAAGTCAAAAATCTACAAGCTTATATCGACTCGGTT
GACTACGAATTCCAACAAAGTTTTGAAGATCGAGAGAAATATGTCGGTAA
TCCCATTAATGCATTTAGTCTAGTGAGACGGACACATCAAGATCTACCGA
AATGGCACAACTATTCACAGCAGATCGTGGGAATGGAGGAACTGTTTGCC
TTGGAGGAAATTATAGCCAAGGTACCGGATAAAAAGGATATGGCATATTC
ACTGGGAGAAATGCATCGGATTGAACAGATTTACGATTTGGAAGCCATTG
AGTTGGCAAGAGGTCGTATTCAGGGCAAGCAATATGACTTTCGGCCTTCT
ATTCGGGATTGTGTTGCTTTGGGAGAGCACAAATTTAAAAGGGAGGACTA
CCAACGGGCTTCTATGTGGTTTCGCGTGGCCATCAAACATGAGCCCGAAG
GAAATGCCGAGATTATCAACAGCATTCTTGGAGATCCCAAGGTTAATTTG
TATACTTTGTACGCCAAATCAATGCTCATATTCGGCATGATCAAGTCAAA
TCCTTCGATGACAATCGCAGAAGCTAAGAAAATATCCTACGAAGCTCTGA
ATAAGGCCAGCCTAGCAGATATAAAATCTCTCTTAAATGAGTTGCTAAGT
CAAACTGACGATGAAATTGTTTACGAATGAATGTTAACAAGACAAAACCC
TCAGACTACGAATTGGATGTCGTGGCCAGTTTCTTAGGCGAAGGAATCAT
GTTTGCACCTATATTTCACCATAACCGAATTCTTGAACTAGCTCCCTTGA
AACAGGAAGTTTTAAATTGGGATCCTTACATTGTCATATATCACGATGTT
CTTAATGACGACGAGATCGATAGTTGAAAAACCCTTGATGATACTGACCG
CGGGGGGAGGTCATTCTTATTTGAAACGCATCCTTTCCACGGCATAAACG
AATTTGAACGAACTAGTTGAACTGACCGGATCCAC
UFO09373.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18231-RB | 1548 | CG18231-RB | 26..1125 | 9..1104 | 5115 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18608460..18608814 | 684..1033 | 1525 | 98.6 | Plus |
| 3L | 28110227 | 3L | 18608210..18608407 | 488..685 | 990 | 100 | Plus |
| 3L | 28110227 | 3L | 18607487..18607662 | 9..184 | 880 | 100 | Plus |
| 3L | 28110227 | 3L | 18607718..18607869 | 185..336 | 760 | 100 | Plus |
| 3L | 28110227 | 3L | 18608003..18608154 | 336..487 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:49:36 has no hits.
UFO09373.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:36 Download gff for
UFO09373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18231-RB | 22..1139 | 4..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:42 Download gff for
UFO09373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18231-RB | 22..1139 | 4..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:31 Download gff for
UFO09373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18231-RB | 22..1139 | 4..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:31 Download gff for
UFO09373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18608461..18608898 | 685..1118 | 94 | | Plus |
| 3L | 18607483..18607662 | 4..184 | 98 | -> | Plus |
| 3L | 18607718..18607869 | 185..336 | 100 | -> | Plus |
| 3L | 18608004..18608154 | 337..487 | 100 | -> | Plus |
| 3L | 18608210..18608406 | 488..684 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:42 Download gff for
UFO09373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18600583..18600762 | 4..184 | 98 | -> | Plus |
| arm_3L | 18600818..18600969 | 185..336 | 100 | -> | Plus |
| arm_3L | 18601104..18601254 | 337..487 | 100 | -> | Plus |
| arm_3L | 18601310..18601506 | 488..684 | 100 | -> | Plus |
| arm_3L | 18601561..18601998 | 685..1118 | 94 | | Plus |
