UFO09374.5prime Sequence
1118 bp (1016 high quality bases) assembled on 2011-08-15
> UFO09374.5prime
CAGTCGACATGATGGGCACGCCGGAATTAAAAATCATATTAGAATTCAGT
GCAGGGGCGGAGTTACTATTTGGTAACATAAAACGCCGTGAATTGAACTT
GGACGGTAAACAAAAATGGACTATTGCTAATCTGCTTAAGTGGATGCATG
CGAATATTTTAACGGAGCGTCCGGAACTTTTTCTTCAAGGAGATACTGTG
CGACCTGGAATTTTAGTACTCATAAATGATACAGACTGGGAATTGCTGGG
TGAACTGGACTACGAGCTGCAGCCCAACGACAATGTGTTGTTTATATCAA
CTTTACACGGTGGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTG
AAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCC
TTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAAT
ATATGTGTAGAAACTGCCGGAATCGTCGTGGTATTCACTCCAGAGCGATG
AAAACGTTTCAGTTTGCTCATGAAAACGGTGTAACAAGGGTGACACTATC
CCATATCACAGCTCACCGTTCTTTCATTGCCATACGAAATTCGATGAGCA
TTCATCAGGCGGGCAGATGTTGATACGCCGATAAACCTTGTGCTTATTTT
TCTTTACGTCTTAAAGCCGTAATATTCCAGCTGACCGGCCTGTTAAGTAA
TTGGACACTGACTGAATG
UFO09374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33276-RB | 391 | CG33276-RB | 3..308 | 9..314 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7640124..7640210 | 200..114 | 420 | 98.9 | Minus |
| 3L | 28110227 | 3L | 7640269..7640339 | 118..48 | 355 | 100 | Minus |
| 3L | 28110227 | 3L | 7639894..7639960 | 314..248 | 335 | 100 | Minus |
| 3L | 28110227 | 3L | 7640015..7640064 | 249..200 | 250 | 100 | Minus |
| 3L | 28110227 | 3L | 7640404..7640444 | 49..9 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:49:41 has no hits.
UFO09374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:37 Download gff for
UFO09374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33276-RB | 1..311 | 7..318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:44 Download gff for
UFO09374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33276-RB | 1..311 | 7..318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:33 Download gff for
UFO09374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33276-RB | 1..311 | 7..318 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:33 Download gff for
UFO09374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7640270..7640337 | 50..117 | 100 | <- | Minus |
| 3L | 7640404..7640454 | 1..49 | 92 | | Minus |
| 3L | 7639894..7639959 | 249..314 | 100 | <- | Minus |
| 3L | 7640016..7640064 | 200..248 | 100 | <- | Minus |
| 3L | 7640125..7640206 | 118..199 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:44 Download gff for
UFO09374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7632994..7633059 | 249..314 | 100 | <- | Minus |
| arm_3L | 7633116..7633164 | 200..248 | 100 | <- | Minus |
| arm_3L | 7633225..7633306 | 118..199 | 100 | <- | Minus |
| arm_3L | 7633370..7633437 | 50..117 | 100 | <- | Minus |
| arm_3L | 7633504..7633554 | 1..49 | 92 | | Minus |
