UFO09375.5prime Sequence
1138 bp (990 high quality bases) assembled on 2011-08-15
> UFO09375.5prime
CAGTCGACATGCCAGGGAGGCCAGAAAAGCCCATGGAGCTAATTAAGCCG
CCTCGCATGAGTGCTGTGTGGTTTTCCACGGGGCCAGAGGTTGAGGGTGG
CTCTGCATCAAGGGAAAGCACTAACTGCAACATCAACATCAACAGCAACA
TTAGCAACAAGAGCAACAAAGATGAGAAATCGCTGGCTTCCTGGCTTCAT
GAAGAAATAAGTCTAGATTGCCAGTTGGGGAAAAACTTGTTCATCTTTGG
CTCTAACGAGCTAACGGAGCGACAAGCGGACAAGCGGACAAGCAGCGGAC
CAACCGAACTGATGGGCGGACATTCCGGCGGACGGACGGACAACTGTGAG
CGATTCCACACAAAACAAGACGATGGGGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTG
CCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAA
ATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATAT
TCTCAATAAACCCTTTAGGAAATAGGCCAGGTTTTCACCGTAACACGCCA
CATCTTGCGAATATATGTGTAGAACTGCCGGAAATCGTCGTGTATTCACT
CAGAGCGATGAAAACGTTCAGTTTGCTCATGGAAACGTGTAACAGGTGAC
CTATTCCATATTCACCAGCTCACCGTCTTTCATTGCATACGAATTCGATG
ACCATCATCAGGCGGGCAGATGTGAATAGCGATAACTTTGCCTATTTCTA
CGCTTAAGCGTATACTTCACGTAACGGCTGGTTAGGGT
UFO09375.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33284-RA | 1132 | CG33284-RA | 539..907 | 9..377 | 1845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21124291..21124659 | 9..377 | 1845 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2445 | 103..190 | 161 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6837 | 103..168 | 149 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2408 | 117..169 | 148 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6848..6954 | 103..213 | 139 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6846 | 103..168 | 138 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2362..2413 | 117..168 | 134 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6793 | 103..169 | 133 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6813 | 103..168 | 128 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6772 | 115..169 | 122 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2359 | 95..168 | 117 | 66.2 | Plus |
| Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 1254..1316 | 280..342 | 116 | 68.8 | Plus |
UFO09375.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:37 Download gff for
UFO09375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33284-RA | 534..910 | 1..381 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:47 Download gff for
UFO09375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33284-RA | 534..910 | 1..381 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:34 Download gff for
UFO09375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33284-RA | 534..910 | 1..381 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:34 Download gff for
UFO09375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21124286..21124659 | 1..377 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:47 Download gff for
UFO09375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21117386..21117759 | 1..377 | 98 | == | Plus |
