UFO09376.5prime Sequence
1097 bp (997 high quality bases) assembled on 2011-08-15
> UFO09376.5prime
CAGTCGACATGAAGTGTAATTTTAAGGTGGCCCGGCTGAGGGGTTTTAGT
TTCGATTGTACCGCGCATATACCAACCATGACAAATAGGTGGAATCTTAC
GGTGCTGCTGGGTCTGACTCTGCTGGCTCTTCAGGGGCCAACGGAAGCCA
TGAGGATGCGAGGAGAACCACTTCCGGGTTTGGCCAATATCGAGAGGCAT
CGCTCCACCGAAGCTGTGCCCCAAGGTCGTGTGATCGGTGGCACCACCGC
CGCCGAGGGCAACTGGCCCTGGATAGCAAGTATCCAAAATGCATACTCGT
ATCACTTGTGCGGAGCCATCATACTCGACGAAACTTGGGTGCTCACAGCG
GCCAGTTGCGTGGCGGGATTGAGGCCATTAAATCTGCTGGTTGTGACTGG
AACTGTGGACTGGTGGGATCTGTATGCTCCGTACTACACTGTGAGCCAGA
TCCATGTGCACTGCAACTTCGACAAGCCGCTGTATCACAATGACATAGCC
CTGCTGCAGTTGTCGTCCAAAATCGAGTTCAACGATGTGACAAAGAATAT
AACCTTGGCGGATATCGATGAATTGGAAGAGGGGGATAAGTTGACCTTTG
CCGGTTGGGGCAGCTCCGAGGCCATGGGCACCTATGGTCGCTATCTGCAG
GAGGCATCCGGCACATATCTGCCGGTGGACGCATGCCGGGAGAAGTTGCA
GAACCAAGATGATGTGGACCTGGGTCATGTGTGTGTCCAAATGGACGCGG
GCCAGGGCGCCTGCCATGGCGACACTGGCGGACCGCTTATCGATGAGCAG
CAGCGCTTGTAGGCATCGGTAATTGGGGTGTGCCATGCGGACGTGGCTAT
CCGGATGTGTATGCGCGTACTGCCTTCTACCACGATTGGATCCGCACCAC
CATGAATGGATGTACGATCGCCGCAAGCTTTCTAGACCCATTCGGTTTGG
CGCGCGGGCCCAAGTAGTTGTCATAATCATAATCATAATCATAATCATAT
CACCACTAGCCTCAGGAGAATCCTGGTCATGACTAGTGCTTGGAATCTCA
CCCAATTAAAAACGCCCGCGCACGAGCGTTCTGGACAAATCCAGAAT
UFO09376.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31266-RB | 993 | CG31266-RB | 1..869 | 55..922 | 4320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17132616..17133462 | 9..854 | 4185 | 99.9 | Plus |
| 3R | 32079331 | 3R | 17133526..17133595 | 853..922 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:49:50 has no hits.
UFO09376.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:38 Download gff for
UFO09376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31266-RB | 1..846 | 78..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:49 Download gff for
UFO09376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31266-RB | 1..869 | 55..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:36 Download gff for
UFO09376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31266-RB | 1..869 | 55..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:36 Download gff for
UFO09376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17132609..17133461 | 1..853 | 99 | -> | Plus |
| 3R | 17133527..17133594 | 854..924 | 95 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:49 Download gff for
UFO09376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12958331..12959183 | 1..853 | 99 | -> | Plus |
| arm_3R | 12959249..12959316 | 854..924 | 95 | <- | Plus |
