UFO09377.5prime Sequence
1136 bp (1017 high quality bases) assembled on 2011-08-15
> UFO09377.5prime
CAGTCGACATGTACGTTTTGATTTTGGAATACTTTTATGTAATGGTGAAA
GTGGAGGTGGAATACTGCGGCATCTGCAACTTTAGCGGGCAGTGCCACCT
GCTGCGCGAGTTCCTGCTGGCCTCGTCGCCCGACTTGGACATATCCTGTC
GCACGGGACGGCGGGGATCCTTCGAGGTGTCCATCGACGGTCAGCTAGTG
CACTCGAAGCTTTCCTGCCTGGCATTTCCCCAGCACGCGAGTGTCCTGGC
CCAAGTGCAGAAGGCGGAGCGTGGAGAGCCCGTGGAGAAAGTCCTGGAGC
AGCCCATCAAGGACTGCGTCGTGATGGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGC
CCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAA
TCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATT
CTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCA
CATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCA
CTCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTACAAGG
TGACACTATCCCATATCACCAGCTCACGTCTTTCATTGCATACGAAAGTC
CGGATGAGCATTCATCAGGCGGGCAGAATGGTGAATAAAGGCGGATTAAA
CTGTGCTTATTTTTCTTACGGTCTTTAAAGCGTATATCAGCTGACGCTGG
TAAGTACTTGGACACTGACTGAAATGCTCAATGTTT
UFO09377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15456-RB | 500 | CG15456-RB | 20..337 | 9..326 | 1590 | 100 | Plus |
| CG15456-RA | 477 | CG15456-RA | 20..337 | 9..326 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20426649..20426908 | 326..67 | 1300 | 100 | Minus |
| X | 23542271 | X | 20426965..20427023 | 67..9 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:49:55 has no hits.
UFO09377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:39 Download gff for
UFO09377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15456-RA | 55..378 | 9..333 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:51 Download gff for
UFO09377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15456-RA | 20..343 | 9..333 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:38 Download gff for
UFO09377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15456-RA | 20..343 | 9..333 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:38 Download gff for
UFO09377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20426649..20426907 | 68..326 | 100 | <- | Minus |
| X | 20426965..20427023 | 9..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:51 Download gff for
UFO09377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20297676..20297934 | 68..326 | 100 | <- | Minus |
| arm_X | 20297992..20298050 | 9..67 | 100 | | Minus |
