UFO09378.5prime Sequence
1142 bp (1012 high quality bases) assembled on 2011-08-15
> UFO09378.5prime
CAGTCGACATGCACAACAACTCCACAAAAACCAAGGAAATGTTCATCGTG
CGTGCTCTAGAAAAGATCCTTGCCGATAAGGACATACGGCGCTCCCATCA
CTCGCAGCTGAAGAAGTCCTGCGATTCGGCGCTGGAGCAGATTAAGGCGG
AGCTAATCAGTGCCGGCCAGATCGCAGAGGGCAATGAGCTGCCCTGTGCC
GCACTCCCGCTGCCCAAGAATGATGCAGCGAGCATCATAAATGCGGAGAC
CTACTTTCTCCCCTTCGAGCTTGCCTGCAAGAGCCGCTCGCCCAGGATCG
TGGTCACCGCACTGGACTGCCTGCAGAAACTCATTGCCTATGGCCATTTG
ACAGGATCCATTCAGGACTCGGCCAATCCGGGTCACCTGCTCATCGACCG
TATCGTTGTGACCATATATGGCTGCTTCAGTGGTCCCCAGACGGACGAGG
CCGTCCAACTGCAGATAATAAAGGCTCTGCTCACGGTGGTCACCTCGCAG
CATGTGGAAATCCATGAATTCACACTGCTGCAAGCTGTGCGCACCTGCTA
CGACATCTATTTGTCCAGCAAGAACCTGGTCAATCAGACCACAGCACGCG
CTACGCTCACCCAAATGTTGAACGTGATATTTGCCCGCATGGAGAATCAA
GTGTACGAGCTACCACCTCCCAATTCCAATCCCACCAACGGCAGCATCCA
CTCGGAGGATTGCAATGGCTCGGGAGAGGAGTCGCTGCGGGATTCCGACG
AAGTAATTGCCTCGGAACTGCTGGCGGAGATCATATCAGCTGCCTACAAT
GAGGCGATGAAGGATCAGGATCGGTCGGTGAGCCAGAGCCAACACTTAAT
GGAAACGACTACTCCTCGCACTCGGATCACGACAGTGTGAGCTGCACAGC
GAAAACGATGCGGTTGTAACGGCTAAGTTTACGCACATCCTGCAGAAAAG
ATGCTTTCTCGGGTTCCGGGCACTGGTGCAAGCTATCGATGAAGGCCTTT
GCCGGATGGACATTCCAGATCCGAAATCGCACGAGCTGGCGTTTCCAAGG
GTGCTGTCATTGCATCTGGCTGGCTGCTCAATCCTCCAGATGGCGGGGCC
GTCTTTCCGGCTCCACGAGATGTTCATTCAATGGCAATAAAC
UFO09378.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec71-RA | 5818 | CG7578-RA | 328..1439 | 9..1127 | 5150 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13793848..13794632 | 9..793 | 3910 | 99.9 | Plus |
| 2L | 23513712 | 2L | 13794892..13795170 | 786..1068 | 925 | 94 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:50:00 has no hits.
UFO09378.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:39 Download gff for
UFO09378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec71-RB | 299..1422 | 9..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:52 Download gff for
UFO09378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec71-RA | 328..1451 | 9..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:40 Download gff for
UFO09378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec71-RA | 328..1451 | 9..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:40 Download gff for
UFO09378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13793848..13794628 | 9..789 | 100 | -> | Plus |
| 2L | 13794896..13795238 | 790..1142 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:52 Download gff for
UFO09378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13793848..13794628 | 9..789 | 100 | -> | Plus |
| arm_2L | 13794896..13795238 | 790..1142 | 93 | | Plus |
