UFO09381.5prime Sequence
1051 bp (958 high quality bases) assembled on 2011-08-15
> UFO09381.5prime
CAGTCGACATGGAATACGAATCTTCCGAAATCAGTGATATAACCACAGGA
AGCTGCAAGAAAAGGCTCACATTTCTGAAATGTATTCTAAGCGACACCAC
AAGCGATCAAAAATGGGCGGCCGAGTTCGGCGAGGACACGGAAGGACATC
AGTTTTCGTTGGACTATCTGCTGGACACCTTCATCGTTCTCTATGACGAG
TGCAGCAACTCCTCCCTGCGCAGGGAGAAGGGCGTCTCTGATTTCCTCAA
ACTATCCAAACCCTTCGTGCACATAGTGCGAAAGCTTCGACTAAGCCGAG
ATGACTTTGACATACTCAAGATCATCGGACGCGGTGCCTTTGGAGAAGTG
TGCGTGGTTCAGATGATATCCACCGAAAAGGTGTATGCCATGAAGATTCT
GAACAAGTGGGAGATGCTGAAGAGGGCCGAGACGGCCTGCTTCCGCGAGG
AGCGGGATGTGTTGGTTTTCGGCGACCGGCAGTGGATCACCAACCTTCAC
TATGCCTTTCAAGACAATATTAACCTGTATCTGGTGATGGACTATTACTG
CGGCGGAGACCTGCTTACATTGCTCAGCAAATTCGAGGACAAGCTGCCCG
AGGACATGGCCAAGTTCTACATCACAGAGATGATCCTGGCAATCAATAGT
ATTCACCAGATTAGGTACGTTCACAGGGACATCAAGCCGGATAATGTACT
GCTCGATAAGCGCGGTCACGTGCGCCTGGCTGACTTTGGATCCTGCCTGC
GCCTGGACAAGGATGGCACCGTACAGTCCAACGTGGCCCGTGGGCACACC
CGACTACATTTCCCCGGAAATTTTGAGGGCCATGGAGGACGGAAAGGGAC
GCTACGGCACGGAGTGTTGATTGGGTGGTCACTCGGAGTGTGCATGGTAC
GAATATGCTCTACGGAGAAGACGCCCTTCTACGCAGAATGTTTGGTGCAA
ACCTTATGTCAAGATCATGACCACAATACTTGTTTCACTTACCGTCAAAG
AAACCCTAAATACAGTATCTGGAAACGTCTCTAGGAACTTGCTTCGGCAA
C
UFO09381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gek-RA | 5108 | CG4012-RA | 112..1142 | 9..1043 | 4680 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24096539..24097019 | 1011..527 | 1820 | 96.3 | Minus |
| 2R | 25286936 | 2R | 24097072..24097343 | 527..256 | 1360 | 100 | Minus |
| 2R | 25286936 | 2R | 24097407..24097626 | 255..36 | 1100 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:50:09 has no hits.
UFO09381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:41 Download gff for
UFO09381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gek-RA | 110..1130 | 9..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:56 Download gff for
UFO09381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gek-RA | 112..1132 | 9..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:43 Download gff for
UFO09381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gek-RA | 112..1132 | 9..1031 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:43 Download gff for
UFO09381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24096517..24097018 | 528..1031 | 95 | <- | Minus |
| 2R | 24097072..24097343 | 256..527 | 100 | <- | Minus |
| 2R | 24097407..24097625 | 37..255 | 100 | <- | Minus |
| 2R | 24098498..24098525 | 9..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:56 Download gff for
UFO09381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19984930..19985148 | 37..255 | 100 | <- | Minus |
| arm_2R | 19986021..19986048 | 9..36 | 100 | | Minus |
| arm_2R | 19984040..19984541 | 528..1031 | 95 | <- | Minus |
| arm_2R | 19984595..19984866 | 256..527 | 100 | <- | Minus |
