UFO09384.5prime Sequence
1069 bp (977 high quality bases) assembled on 2011-08-15
> UFO09384.5prime
CAGTCGACATGTTCAAGTTGGTGGTATTGTCTGCTCTGCTCGCTGTAGCC
GCTGCCCGTCCCGGTCACCTGTTGGAGTCCTCCCCGCTGGTCTACGCTGC
CCCAGCAGCGACGACCATCGTCCAGGAGCCCGTTCTGGCCAAGGTGGGAG
CCGTGGTCAAGAGCGTACCCACTGCCGTCAGCCACCAGAGCCAGTCGGTG
GTGCACAGTCACGCTCATGTTGTCGAGGATGTCGTTGCTCCCGTGGTGAA
GTCCACTCCGGTGGTCAGCTATGCTGCTGCCGCTCCAGTGGTTCACACCT
CCTATGCCGCTGCTCCCGTTGTCCACACCAGTTACGCTGCTCCTGCTCCC
GTTGTTCACACATCCTACGCCGCCGCCGCTCCCGTTCTGGCCACATCCTA
CGCCCAAGTGGCCGCCTCCTCGCCGCTGACCTACACCGCCACTGGTGTGT
GGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCA
CCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAG
AAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCA
GGATTGCTGAGACGAAAACATATCTCAATAAACCTTAGGGAAATAGGCCA
GGTTTCACCGTACACGCCACATCTTGGCGAATATATGTGTAGAAACTGGC
GAATTCGTCCTGTATTCACTCCGAACGATGAAACGTTCAGTTTGCATGGT
ACCGGTTACAGGGTAACAT
UFO09384.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13043-RA | 646 | CG13043-RA | 80..523 | 9..452 | 2220 | 100 | Plus |
| CG13063-RA | 544 | CG13063-RA | 46..416 | 7..386 | 740 | 80.5 | Plus |
| CG13044-RA | 624 | CG13044-RA | 168..307 | 114..256 | 290 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16305348..16305791 | 452..9 | 2220 | 100 | Minus |
| 3L | 28110227 | 3L | 16306720..16307028 | 20..331 | 655 | 81.4 | Plus |
| 3L | 28110227 | 3L | 16302807..16302946 | 256..114 | 245 | 79.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:50:22 has no hits.
UFO09384.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:43 Download gff for
UFO09384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13043-RA | 76..522 | 9..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:02 Download gff for
UFO09384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13043-RA | 80..526 | 9..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:48 Download gff for
UFO09384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13043-RA | 80..526 | 9..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:48 Download gff for
UFO09384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16305348..16305791 | 9..452 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:02 Download gff for
UFO09384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16298448..16298891 | 9..452 | 100 | | Minus |
