UFO09387.5prime Sequence
1105 bp (1014 high quality bases) assembled on 2011-08-15
> UFO09387.5prime
CAGTCGACATGAACTTCTACAACATCTTCGTTTTCGTCGCTCTCATTCTG
GCCATCACCATTGGACAATCGGAAGCTGGTTGGCTAAAGAAAATTGGCAA
GAAAATCGAACGTGTTGGTCAGCACACTCGCGACGCCACAATCCAGGGAC
TGGGAATCGCTCAACAGGCCGCCAATGTTGCAGCCACTGCTCGAGGTGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG
TCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATT
GGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCA
GGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGC
CGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTG
CTCATGGAAAACGGTGTAACAAAGGGTGAACACTATCCCATATCACCAGC
TCACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGG
GCAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACG
TCTTTAAAAGCCGTATATCCAGCTGACGGTCTGGTATAGGTACATTGAGC
AACTGACTGAAATGCCTCAAATGTTCTTTACGATGCCATGGGTATTATTC
ACGTGTATATCCAGTGATTTTTCTCCAGTTAGCCTCCTAGCTCTCTTGAA
GATCC
UFO09387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CecA2-RA | 355 | CG1367-RA | 82..271 | 8..197 | 950 | 100 | Plus |
| CecA1-RA | 339 | CG1365-RA | 74..263 | 8..197 | 800 | 94.7 | Plus |
| CecC-RA | 386 | CG1373-RA | 93..272 | 8..187 | 570 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30212237..30212337 | 8..108 | 505 | 100 | Plus |
| 3R | 32079331 | 3R | 30210947..30211047 | 8..108 | 475 | 98 | Plus |
| 3R | 32079331 | 3R | 30212395..30212484 | 108..197 | 450 | 100 | Plus |
| 3R | 32079331 | 3R | 30216576..30216676 | 8..108 | 385 | 92.1 | Plus |
| 3R | 32079331 | 3R | 30211108..30211197 | 108..197 | 330 | 91.1 | Plus |
| 3R | 32079331 | 3R | 30213479..30213568 | 197..108 | 255 | 85.6 | Minus |
| 3R | 32079331 | 3R | 30216752..30216824 | 115..187 | 200 | 84.9 | Plus |
| 3R | 32079331 | 3R | 30213626..30213730 | 108..4 | 195 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:50:27 has no hits.
UFO09387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:43 Download gff for
UFO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CecA2-RA | 79..274 | 1..201 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:05 Download gff for
UFO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CecA2-RA | 79..274 | 1..201 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:49 Download gff for
UFO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CecA2-RA | 79..274 | 1..201 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:49 Download gff for
UFO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30212234..30212336 | 1..107 | 96 | -> | Plus |
| 3R | 30212395..30212484 | 108..197 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:05 Download gff for
UFO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26037956..26038058 | 1..107 | 96 | -> | Plus |
| arm_3R | 26038117..26038206 | 108..197 | 100 | == | Plus |
