UFO09388.5prime Sequence
1122 bp (1007 high quality bases) assembled on 2011-08-15
> UFO09388.5prime
CAGTCGACATGAATCCCAAGAGCGAAGTCCTCATTGCAGCCGTGCTCTTC
ATGCTGCTGGCCTGCGTCCAGTGTCAATTGACCTTCTCGCCGGATTGGGG
CAAGCGTTCGGTGGGCGGAGCTGGTCCTGGAACCTTTTTCGAGACACAGC
AGGGCAACTGCAAGACCTCCAACGAAATGCTGCTCGAGATCTTCCGCTTC
GTGCAATCTCAGGCACAGCTCTTTCTGGACTGCAAGCACCGCGAGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGG
TTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCG
GAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCT
CATGGAAACGGTGTACAAGGGTGAACACTATCCCATATCACCAGCTCACC
GTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGGCAGA
TGTGAATAAAGGCCGGATAAAACTTGTGCTATTTTTCTTTACGTCTTTAA
AAGGCGTAATATCCAAGCTGAACGTCTGTTTAGGTACATTGAGCCACTGA
CTGAAATGCCTCAAATGTTCTTACGAATGCAATGGGAATATATCCACGGT
GGATATCCATAATTTTTTCCAT
UFO09388.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Akh-RA | 536 | CG1171-RA | 120..356 | 9..245 | 1185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4141723..4141890 | 78..245 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 4141586..4141658 | 9..81 | 350 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:50:31 has no hits.
UFO09388.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:44 Download gff for
UFO09388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Akh-RA | 112..356 | 1..245 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:07 Download gff for
UFO09388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Akh-RA | 112..356 | 1..245 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:50 Download gff for
UFO09388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Akh-RA | 112..356 | 1..245 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:50 Download gff for
UFO09388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4141578..4141654 | 1..77 | 94 | -> | Plus |
| 3L | 4141723..4141890 | 78..245 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:07 Download gff for
UFO09388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4141578..4141654 | 1..77 | 94 | -> | Plus |
| arm_3L | 4141723..4141890 | 78..245 | 100 | == | Plus |
