UFO09390.5prime Sequence
1117 bp (1010 high quality bases) assembled on 2011-08-15
> UFO09390.5prime
CAGTCGACATGAACGTATTCAATGGTTTCTTGCTAGTCTTCCTGGGCCTG
GCCCTCAGCTCTGTGGATGCACAGATAGCAACACGCCAGGAAACCTCGGA
GGACAAGGCTTGTGGTCCCCACGCCTACTACAATTACGCCCGGCACACTT
GCCTGCCATTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGG
GGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAA
CTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTT
AGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATA
TGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAA
AACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATC
CCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAG
CATTCATCAGCGGGCAGAATGTGAATAAAGGCCGGATAAACTTGTGCTTA
TTTTTCTTACGGTCTTTAAAAGGCCGTAATATCCAGCTGACGGTCTGGTT
ATAGGTACATTGAGCAACTGACTGAAATGCCTCAAATGTTCTTTACGATG
CCATTGGGATATAATCACGTGTATTTCCAGGTGATTTTTTTTCTCCATTT
TAGCTCTAGCTCTGAAGAATCATACTCGATAGCTACTAACGAGTTTAGAT
CCATTTATGAGCAAGTA
UFO09390.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Met75Ca-RA | 242 | CG32197-RA | 21..173 | 9..161 | 765 | 100 | Plus |
| Met75Cb-RA | 241 | CG18064-RA | 21..173 | 9..161 | 765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18469446..18469598 | 161..9 | 765 | 100 | Minus |
| 3L | 28110227 | 3L | 18472212..18472364 | 161..9 | 765 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 730..797 | 123 | 68.1 | Plus |
UFO09390.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:45 Download gff for
UFO09390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Met75Cb-RA | 14..185 | 1..171 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:11 Download gff for
UFO09390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Met75Ca-RA | 14..185 | 1..171 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:54 Download gff for
UFO09390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Met75Cb-RA | 14..185 | 1..171 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 00:52:54 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 16:04:11 has no hits.
