UFO09391.5prime Sequence
1135 bp (1016 high quality bases) assembled on 2011-08-15
> UFO09391.5prime
CAGTCGACATGTGGAAGCTGGACACCAAAGGAGGAATCATCTGCTCGGGC
TGCCTGTCCATAGCCTTTGCCATAACCTATCTGGTTTTGATGGACGATTA
CTTCTGGAAATATGGACTCTACGAGATGGGAATACACATTTCGGCGCTGC
AGATCTTGGGAAGCGTGGTCCTCATCGTTGGAGCCATAAAGCAAAAGCAC
AAGTTCTTCGTGCCGTGGATGATAACCACAGGATTCTTTTTATACCTGAT
GGTGAACCTGTTCATTTCACTGATAGTCCAGGGCACAGCTTGGATCTTCG
GACCATTGATGGTCGTTCCGTTCACAGCCTATCTGGGCTGCGCCCTGTAC
TCGGTGCAGAAGGCCTTCGACAGGATGCGCAAGGAGGAGCCACCGGCATA
TGCCAGCTTGTCCGACAAGAAGGAGTTCATCAATCACATAGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAA
ACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTG
CGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATAT
TGGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGGTTTTC
ACCGTAACACGCCACATCTTGCGATATATGTGTAGAAACTGCCGGAAATC
GTCGTGTATTCAACTCCAGAGCGATGAAACGGTTCAGTTGCTCCATGGAA
AACGTGTAACAAGGTGAACACTAATCCAATAATCACCAGCTCACGGTCTT
TCATGCCATACGAATCGATGAACTCTCAGGCGCAG
UFO09391.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12825-RA | 585 | CG12825-RA | 49..482 | 7..440 | 2170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7789570..7789712 | 185..327 | 700 | 99.3 | Plus |
| 2R | 25286936 | 2R | 7789770..7789885 | 325..440 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 7789254..7789358 | 7..111 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 7789421..7789500 | 112..191 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:50:45 has no hits.
UFO09391.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:46 Download gff for
UFO09391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12825-RA | 41..474 | 7..440 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:13 Download gff for
UFO09391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12825-RA | 49..482 | 7..440 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:57 Download gff for
UFO09391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12825-RA | 49..482 | 7..440 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:57 Download gff for
UFO09391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7789577..7789712 | 192..327 | 100 | -> | Plus |
| 2R | 7789773..7789885 | 328..440 | 100 | == | Plus |
| 2R | 7789254..7789358 | 7..111 | 100 | -> | Plus |
| 2R | 7789421..7789500 | 112..191 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:13 Download gff for
UFO09391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3677082..3677217 | 192..327 | 100 | -> | Plus |
| arm_2R | 3677278..3677390 | 328..440 | 100 | == | Plus |
| arm_2R | 3676759..3676863 | 7..111 | 100 | -> | Plus |
| arm_2R | 3676926..3677005 | 112..191 | 100 | -> | Plus |
