UFO09393.5prime Sequence
1115 bp (1008 high quality bases) assembled on 2011-08-15
> UFO09393.5prime
CAGTCGACATGTCCGATCATTTCAACTTCAACGAAGCCTTCAACAGCCAG
ACCATGCGTGGTCGCGCCAATGTAGCCAAGGCCACCTGGGCCTCGTTGGG
ACTCGTCTACGTCCTGGTCAAGATGCACCGCCGCAACACGAAGCGGCGCG
AGACCAAGCTCTACTGCAAGGGCTGCCAGCAGGCCATGCTCCATGGCGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG
TCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATT
GGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCA
GGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGC
CGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTG
CTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCT
CACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGG
CAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTACGTC
TTTAAAAGGCCGTAATATCCAGCTGACGGTCTGCATAGTACATTGAGCAA
CTGACTGAATGCTCAAATGTTCTTTACGATGCCATTGGAATTATCAACGG
GGTATATTCAGTGATTTTTCCTCCATTAAGCTCTAGCCTCTGAAGATCTG
AACTCGGTATGCCAT
UFO09393.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15458-RA | 486 | CG15458-RA | 113..301 | 9..197 | 945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20413837..20413962 | 197..72 | 630 | 100 | Minus |
| X | 23542271 | X | 20414022..20414087 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 766..833 | 123 | 68.1 | Plus |
UFO09393.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:47 Download gff for
UFO09393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15458-RA | 85..273 | 9..197 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:17 Download gff for
UFO09393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15458-RA | 113..301 | 9..197 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:59 Download gff for
UFO09393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15458-RA | 113..301 | 9..197 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:59 Download gff for
UFO09393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20413837..20413962 | 72..197 | 100 | <- | Minus |
| X | 20414025..20414087 | 9..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:17 Download gff for
UFO09393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20284864..20284989 | 72..197 | 100 | <- | Minus |
| arm_X | 20285052..20285114 | 9..71 | 100 | | Minus |
