UFO09394.5prime Sequence
1112 bp (995 high quality bases) assembled on 2011-08-15
> UFO09394.5prime
CAGTCGACATGACGTCTCCCTTCGACGGCATTGCCTGCTTCTGGCTGTCA
CTAGTCTGGATTCAACTGGGTATCATCAATGCCGGCCTGGAGTTCCTCAA
GGATTTCGTACCCCTTCAGCTGGTGCGGCTGAGAGAGATCGAGGACGAAG
AGCGGGAAATCGAGGGCGAGTGCACCCTGGGAGCCATCAGCATTCGTATG
TTCGCCTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATG
TGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAA
CGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCC
ATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCA
TTCATCAGCGGGCAGAATGTGAATAAAGGCCGGATAAACTTGGTGCTTAT
TTTTCTTTACGGTCTTTAAAAGGCGTAATATCAGCTGACGGTCTGGTTAA
TAGGTACATGAGCACTGACTGAAATGCCTCAAAATGTTCTTTACGATGCA
ATGGAAATATACACGGGGTAATCAAGTGATTTTTTCTCCATTAGCTCTAG
TCTGGAAGAATC
UFO09394.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11741-RB | 356 | CG11741-RB | 15..215 | 9..209 | 1005 | 100 | Plus |
| CG11741-RA | 455 | CG11741-RA | 15..215 | 9..209 | 1005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8528663..8528863 | 209..9 | 1005 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 778..845 | 123 | 68.1 | Plus |
UFO09394.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:48 Download gff for
UFO09394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11741-RA | 8..218 | 1..213 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:18 Download gff for
UFO09394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11741-RA | 8..218 | 1..213 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:01 Download gff for
UFO09394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11741-RA | 8..218 | 1..213 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 00:53:01 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 16:04:18 has no hits.
