Clone UFO09405 Report

Search the DGRC for UFO09405

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:94
Well:5
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptRbp2-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO09405.5prime Sequence

478 bp (478 high quality bases) assembled on 2011-08-17

> UFO09405.5prime
CAGTCGACATGGATGGAAGAGGTGGTTATGAACACGCTAGAAGCGGATTC
GGTGGGGATCGGGCATCCAAGCAGTTGCCCACGGAACCGCCGTTCATCGC
ATTTGTCGGCAATTTGCCGCAAGGCCTTGTGCAGGGCGATGTGATCAAAA
TATTCCAGGACTTTGAGGTGAAGTACGTGCGGCTGGTGAAGGACCGGGAA
ACGGATCAGTTCAAAGGCTTCTGCTACGTCGAATTCGAGACGCTGGACAA
TCTGGAGCGGGCGCTAGAGTGCGATGGTCGGATCAAACTGGACGATCTGT
CGGCGCCGCTAAGGATCGACATTGCCGATCGGAGAAAAAATGATCCCCCT
GGTGGCGGTGTTGGCGGCGGCAACGGCGGCATGACCCGCGGCGACGGCGG
CAGAGACGGTTTCCAGAAGCGCGGCCCACCTCGCCAGGGCGGCAGCAGTC
ATCCTACAGCCGGGGAGGTCCTGGCACT

UFO09405.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp2-RC 2640 CG4429-RC 32..504 7..478 2310 99.4 Plus
Rbp2-RA 3898 CG4429-RA 32..504 7..478 2310 99.4 Plus
Rbp2-RD 2730 CG4429-RD 32..504 7..478 2310 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16449872..16450178 39..345 1535 100 Plus
X 23542271 X 16450314..16450446 347..478 615 99.2 Plus
3R 32079331 3R 30726475..30726649 72..246 350 80 Plus
Blast to na_te.dros performed on 2014-11-27 00:06:08 has no hits.

UFO09405.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:07 Download gff for UFO09405.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp2-RA 20..492 7..478 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:32 Download gff for UFO09405.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp2-RD 32..504 7..478 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:55 Download gff for UFO09405.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp2-RD 32..504 7..478 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:55 Download gff for UFO09405.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16449874..16450179 41..346 99 -> Plus
X 16448696..16448729 7..40 97 -> Plus
X 16450314..16450446 347..478 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:32 Download gff for UFO09405.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16342729..16342762 7..40 97 -> Plus
arm_X 16343907..16344212 41..346 99 -> Plus
arm_X 16344347..16344479 347..478 99   Plus