UFO09405.5prime Sequence
478 bp (478 high quality bases) assembled on 2011-08-17
> UFO09405.5prime
CAGTCGACATGGATGGAAGAGGTGGTTATGAACACGCTAGAAGCGGATTC
GGTGGGGATCGGGCATCCAAGCAGTTGCCCACGGAACCGCCGTTCATCGC
ATTTGTCGGCAATTTGCCGCAAGGCCTTGTGCAGGGCGATGTGATCAAAA
TATTCCAGGACTTTGAGGTGAAGTACGTGCGGCTGGTGAAGGACCGGGAA
ACGGATCAGTTCAAAGGCTTCTGCTACGTCGAATTCGAGACGCTGGACAA
TCTGGAGCGGGCGCTAGAGTGCGATGGTCGGATCAAACTGGACGATCTGT
CGGCGCCGCTAAGGATCGACATTGCCGATCGGAGAAAAAATGATCCCCCT
GGTGGCGGTGTTGGCGGCGGCAACGGCGGCATGACCCGCGGCGACGGCGG
CAGAGACGGTTTCCAGAAGCGCGGCCCACCTCGCCAGGGCGGCAGCAGTC
ATCCTACAGCCGGGGAGGTCCTGGCACT
UFO09405.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp2-RC | 2640 | CG4429-RC | 32..504 | 7..478 | 2310 | 99.4 | Plus |
Rbp2-RA | 3898 | CG4429-RA | 32..504 | 7..478 | 2310 | 99.4 | Plus |
Rbp2-RD | 2730 | CG4429-RD | 32..504 | 7..478 | 2310 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16449872..16450178 | 39..345 | 1535 | 100 | Plus |
X | 23542271 | X | 16450314..16450446 | 347..478 | 615 | 99.2 | Plus |
3R | 32079331 | 3R | 30726475..30726649 | 72..246 | 350 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:06:08 has no hits.
UFO09405.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:07 Download gff for
UFO09405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp2-RA | 20..492 | 7..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:32 Download gff for
UFO09405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp2-RD | 32..504 | 7..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:55 Download gff for
UFO09405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp2-RD | 32..504 | 7..478 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:55 Download gff for
UFO09405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16449874..16450179 | 41..346 | 99 | -> | Plus |
X | 16448696..16448729 | 7..40 | 97 | -> | Plus |
X | 16450314..16450446 | 347..478 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:32 Download gff for
UFO09405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16342729..16342762 | 7..40 | 97 | -> | Plus |
arm_X | 16343907..16344212 | 41..346 | 99 | -> | Plus |
arm_X | 16344347..16344479 | 347..478 | 99 | | Plus |