UFO09406.5prime Sequence
1065 bp (851 high quality bases) assembled on 2011-08-17
> UFO09406.5prime
CAGTCGACATGGGCATCAATTGCCTTAACATCTTCAGACGTGGCCTCCAC
ACGAGTTCCGCCCGATTGCAGGTGATCCAGAGCACCACGCCCACCAAGCG
GATATGCATCGTAGGCGCCGGACCCGCCGGCTTCTATGCCGCCCAATTGA
TCCTCAAGCAGCTGGACAATTGCGTGGTGGATGTGGTCGAGAAGCTGCCG
GTTCCCTTCGGACTGGTGCGCTTTGGCGTTGCGCCCGATCATCCGGAGGT
CAAGAACGTAATCAACACCTTCACCAAGACCGCCGAGCATCCGCGTCTGC
GTTACTTTGGCAACATATCGCTGGGTACGGATGTCAGCCTGCGTGAGCTA
AGAGATCGATACCATGCCGTGCTCCTCACCTACGGAGCGGACCAGGATCG
GCAACTAGAGCTGGAGAACGAGCAGTTGGATAATGTGATATCAGCCCGGA
AATTTGTGGCCTGGTATAATGGATTGCCGGGTGCGGAAAACTTGGCTCCG
GATCTGAGCGGTCGCGATGTCACGATTGTGGGTCAGGGAAACGTGGCTGT
GGATGTGGCTAGGATGCTGCTCAGTCCCTTGGATGCTTTGAAGACTACGG
ACACAACTGAGTACGCCTTGGAAGCGCTTTTCTTGCAGCCAAGTGGAACG
AGTCCATTTGGTTGGCCGACGAGGTCCTCTGCAAGCTGCCTTCACCATTA
AAGAGCTGAGGGAGATGCTCAAGCTGCCCAATGTACACACCCCGGTGGCG
TACAGAGGATTTCTCGGGCATTGACATGCCAGCTGGATAAACTTCAGCGG
CCTCGCAAGAGACTTACCGTGACTGATGCTTAAGAGTCTAAAGGAAGCAG
GGCATGATCTCTGGCTCAAAACATTCCTGCCCCTCTTTCTGCGCCGCTCC
GAAAGCCGATAGCCCCAGGGGAAATGGAGTTTCTGTCACGGAACCTGCAG
CAGGAACAGCAGTGCCAACAAGTTCCAAAGCGTCTTCCTCGACTAAATCT
TGGCGCAGCATTGGCTACAATCAAGTTGCGCTGATATCGGCATCACTTGA
CCTTCGACCGGTCGG
UFO09406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dare-RA | 1681 | CG12390-RA | 158..1215 | 9..1064 | 4580 | 96.5 | Plus |
| CG30033-RC | 572 | CG30033-RC | 217..428 | 220..9 | 1060 | 100 | Minus |
| CG30033-RB | 1002 | CG30033-RB | 217..428 | 220..9 | 1060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11292046..11292419 | 593..220 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 11292806..11293017 | 220..9 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 11291817..11291991 | 768..592 | 755 | 97.7 | Minus |
| 2R | 25286936 | 2R | 11291554..11291761 | 977..767 | 530 | 93 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:06:17 has no hits.
UFO09406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:07 Download gff for
UFO09406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dare-RA | 145..1184 | 1..1040 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:37 Download gff for
UFO09406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dare-RA | 148..1187 | 1..1040 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:59 Download gff for
UFO09406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dare-RA | 148..1187 | 1..1040 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:59 Download gff for
UFO09406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11291818..11291989 | 594..767 | 97 | <- | Minus |
| 2R | 11292046..11292418 | 221..593 | 100 | <- | Minus |
| 2R | 11292806..11293021 | 1..220 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:37 Download gff for
UFO09406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7179323..7179494 | 594..767 | 97 | <- | Minus |
| arm_2R | 7179551..7179923 | 221..593 | 100 | <- | Minus |
| arm_2R | 7180311..7180526 | 1..220 | 98 | | Minus |
