UFO09408.5prime Sequence
1142 bp (942 high quality bases) assembled on 2011-08-17
> UFO09408.5prime
CAGTCGACATGGCATTTCTTTGCCCCGTGCGCATGAGGCGCGACAAGAAG
AAAGCTACAAATGCCAGCATTGAGAGGGACTTACCAGCTGTGGGTGTATT
GGGCATGGGCCGCATAACTGGTTCCTCCAGCATTGAAACACTTGTAAGAG
TGGGCATTGAAAAGGAACACGGTCTAAGTCCTGATTCCAAGATGGTTGTG
CTGCACGACTTTACTCCTTGCGTGGATGATGAACTAGAGGTGAAGCGTGG
ACAGCTGGTTAATATCTTGTACAGAGAGAACGATTGGGTCTACGTGATTG
GTCAGGACTCTAGGCAGGAGGGTTTCATACCCTTCTCTTATTGTGCTCCC
TGCAACACGCAACTGGCGGATTTGGCTGTTAAGAAGAAACTGCCAAGGGA
ACAGTGTCCAGAGCAGCCGATCGAAGAGAATATACCACTTTTGGGCACGG
ATAACAAGCTGGATGTTCTTTGCGATGAAACCTTGAATCCTGGCTCCGCC
AACAGCATAGAGAACACCCTGCTGGTGGAGCCAGAGTGTACTCCTTTCGT
GAAGGAACCCTCCGGGCGCTGTATCGTCTTGTACACCTTTATAGCCAGGG
ACGAGAATGATTTGTCTGTGGAACGGGGTGAATTTGTTACCGTGCTAAAT
CGCGAGGATCCCGATTGGTTTTGGATAATGCGCAGTGATGGCCAGGAAGG
ATTTGTGCCAGCCAGCTTTATTTATCCTGCAGACAGTGTACGAGTTTTGC
AGCAACAGAAACCCACTTTAAATGCCATGGAGACCATTTTGCAGCAGGGT
CACATGGTCAGCAGAGCCAGCAACAGCAGCAGCCTCAATTGGGCTTGGGA
ACAGAATGATCTACGCTACCATGGCACGGAGCTGGGTGATGCTGTATGAT
TACAAGGCGCAAGCTCCAGACGATCTGTACCTTTCTGTGCGGAGAGGAGA
TTTGAATTACCCAAACTTACCAATCAGACTGTTGATGGCTGGCTTTGGGC
TTATGCTCGAAAACCCGCAAATTGGAATTTCATCCCGGAAGGCTATGCCG
AACCACCCCGGCGATTGAACAAGCTTTGCAAGCTTTCTAGACATTCGATT
GGCGCCGGGCCCAGGTAAGTGTCTAAATCTATCCATACCTAT
UFO09408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10933-RA | 1402 | CG10933-RA | 132..1181 | 9..1058 | 4915 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17723954..17724835 | 177..1058 | 3915 | 97.7 | Plus |
| 2R | 25286936 | 2R | 17723770..17723895 | 53..178 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 17723440..17723485 | 9..54 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:06:28 has no hits.
UFO09408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:08 Download gff for
UFO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10933-RA | 125..1177 | 6..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:41 Download gff for
UFO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10933-RA | 129..1181 | 6..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:03 Download gff for
UFO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10933-RA | 129..1181 | 6..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:03 Download gff for
UFO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17723437..17723485 | 6..54 | 97 | -> | Plus |
| 2R | 17723772..17723895 | 55..178 | 100 | -> | Plus |
| 2R | 17723956..17724835 | 179..1058 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:41 Download gff for
UFO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13611277..13611400 | 55..178 | 100 | -> | Plus |
| arm_2R | 13610942..13610990 | 6..54 | 97 | -> | Plus |
| arm_2R | 13611461..13612340 | 179..1058 | 97 | | Plus |
