UFO09414.5prime Sequence
1107 bp (1005 high quality bases) assembled on 2011-08-17
> UFO09414.5prime
CAGTCGACATGTCTGTGCCTTTCAGTGGCGCATTGCGGCGTTCCGGCGGC
ATTGTGTCCGCCATTGGCAAGCAGCTGAAGAGCGTGAATTTGAAGGGCGT
CAAGCGGATAACCGTGCAGTTCGATCCATTCGCGGAAAATGTCAAGTCCA
CACGGGAATTCCTCTTCCTGCTCTCCACACCCAAAGTGGCAGCTACGAAT
CCCAAGTGCGTGGTCAAGCCAGAAATCGTCTGCGATCGCCAGCCGGCCAA
CATCAAGTTTGCCCTGATTGATTCAGCGCAAGAACAAGCCCAAGTCAAGG
AGATCCGCTTCAACAGCGATAACCTAAACACACTAGAGCTGCTGCAGCTG
TGCAACAAGCACGTGTCCAGCTTGGCACCGCGCGAGGAGATCACCAACAA
GGTCCTGACCAAGGCGGAGAAACAGAAACTAGCAGGAGGCGCCGGCGGCG
GAAAGAAGGCAACCAAGAAGAAGGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAATCA
AAACTGGTGAAACTCCACCCAGGGATTGGCTGAGACGAAAAACATATTCT
CAATAAACCCTTTAGGAAATAGCCAGGTTTCACCGTACACGCCACATCTT
GCGAATATATGTGTTAGAACTGCGAATCGGTCTGGTATCACTCAGAGCGA
TGAAACGTTCAGTTTGCTCATGAAACCGGGTACCAGGGTGAACACTATCC
AATACAG
UFO09414.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33155-RC | 829 | CG33155-RC | 106..570 | 9..473 | 2325 | 100 | Plus |
| mRpL53-RA | 829 | CG30481-RA | 106..570 | 9..473 | 2325 | 100 | Plus |
| CG33155-RA | 725 | CG33155-RA | 147..466 | 154..473 | 1600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13955213..13955405 | 281..473 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 13954300..13954446 | 9..155 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 13954916..13955044 | 154..282 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:07:11 has no hits.
UFO09414.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:10 Download gff for
UFO09414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33155-RC | 102..569 | 9..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:02 Download gff for
UFO09414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL53-RA | 106..573 | 9..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:20 Download gff for
UFO09414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL53-RA | 106..573 | 9..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:20 Download gff for
UFO09414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13954300..13954445 | 9..154 | 100 | -> | Plus |
| 2R | 13954917..13955044 | 155..282 | 100 | -> | Plus |
| 2R | 13955215..13955405 | 283..473 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:02 Download gff for
UFO09414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9841805..9841950 | 9..154 | 100 | -> | Plus |
| arm_2R | 9842422..9842549 | 155..282 | 100 | -> | Plus |
| arm_2R | 9842720..9842910 | 283..473 | 100 | == | Plus |
