UFO09415.5prime Sequence
1116 bp (904 high quality bases) assembled on 2011-08-17
> UFO09415.5prime
CAGTCGACATGTCCGCCTACAAGCTGGAGACCGCCCCGTTCGACCCACGG
TTCCCTAACCAGAACGTGACCCGCTACTGCTACCAGTCGTACATCGACTT
CCACCGCTGCCAGAAGAAGCGCGGCGAGGACTTCGCGCCCTGCAACTACT
TCCAGAAGGTCTACAAGTCGATGTGCCCCAACGCCTGGGTGGAGAAGTGG
GACGACCAGCGCGAGAGCGGCACATTCCCCGGCCGCATCGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTTAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC
GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCAC
CGTAACACGCCCCATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCG
TTCGTGGTATTCACTCCAGAGCGATGAAAAAGTTTCAGTTTGCCTCATGG
AAAACGGTGTAACAAGGGTTGACCACTATCCCCATTATCACCAGCTCACC
GTCTTTCATGCCATAACGAAATTCCGGATGAAGCATTCATCCGGGCGGGC
TAGATTGTGAATAAAGGCCCGAATAAACTTGGTGCTTATTTTTCTTTACG
GTCTTTAAAAAGGCCGTAAATTTCAGCTGAACGGTCTGGTATAGGTACCA
TTGAGCAACTGACTGAATGCCTCAAATGTCCTTAAGAATGCATTGGAATT
ATCCAACGGGGATTTC
UFO09415.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVIb-RD | 678 | CG14235-RD | 73..305 | 7..239 | 1165 | 100 | Plus |
| CoVIb-RB | 554 | CG14235-RB | 98..330 | 7..239 | 1165 | 100 | Plus |
| CoVIb-RC | 706 | CG14235-RC | 101..333 | 7..239 | 1165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19740910..19741142 | 239..7 | 1165 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..289 | 808..866 | 121 | 69.5 | Plus |
UFO09415.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:11 Download gff for
UFO09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14235-RA | 133..376 | 1..246 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:06 Download gff for
UFO09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIb-RC | 99..342 | 1..246 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:23 Download gff for
UFO09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIb-RC | 96..339 | 1..246 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 00:59:23 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 16:12:06 has no hits.
