UFO09417.5prime Sequence
1045 bp (913 high quality bases) assembled on 2011-08-17
> UFO09417.5prime
CAGTCGACATGGCCGAGGCTAACAAGAGGAATATCCCCATCAAGCTGGGC
GACTTCAGCGTCATCGACACGGAGTTCAGCAACATCCGCGAGCGCTTCGA
CTCCGAGATGCGCAAAATGGAGGAGGAGATGGCCAAGTTCCGTCACGAGC
TGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGCTCTACTAAAAAA
ACAACAACTACCAGCTCAACGACAAACTCGGCGCTGCCATCCCGAATCCC
AAAGCAACAGAACTACGTCTCCGACATTAGCTCACCCTTGATCCAGGATG
AGGGCGATAACAAAGTGCTGAAGCTGCGTTTCGATGTCAGCCAGTATGCG
CCCGAGGAAATTGTTGTGAAAACCGTCGACCAGAAGCTATTGGTGCACGC
CAAGCACGAGGAGAAGTCGGACACAAAGAGCGTGTACAGGGAGTACAATC
GGGAGTTCCTGCTGCCCAAGGGCGTCAATCCCGAGTCCATCCGCTCGTCC
CTCAGCAAGGACGGAGTCCTGACCGTGGACGCCCCCCTGCCAGCACTCAC
CGCCGGCGAGACACTGATTCCCATTGCGCACAAGGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGATGTCATTACTGGATCTATCAACACGAGTCTC
AGAGAGCTGCTCGATTATCATAATTACGCCCCGCCCTGCCATCATCGCAG
TACTGTTGTATTCATTAAGCATTCTGCCGACATGCAGCCATCACAACGCA
TGATGAACTGAATCGCAGCGCATCAGCACCTTGTCGCTTGCGTATATATT
TGCCATGTGAACGGGGGCGAAGAGTTGTCATATGCCACGTTTATCAACTG
GTGAACTCACAAGATGCTGAAACGAAAACATATCTCATACCTTAG
UFO09417.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14207-RB | 1267 | CG14207-RB | 306..881 | 9..584 | 2880 | 100 | Plus |
| CG14207-RD | 1380 | CG14207-RD | 480..854 | 210..584 | 1875 | 100 | Plus |
| CG14207-RC | 753 | CG14207-RC | 113..487 | 210..584 | 1875 | 100 | Plus |
| CG14207-RD | 1380 | CG14207-RD | 306..487 | 9..190 | 910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19610695..19610887 | 392..584 | 965 | 100 | Plus |
| X | 23542271 | X | 19605504..19605682 | 9..187 | 895 | 100 | Plus |
| X | 23542271 | X | 19610525..19610625 | 294..394 | 505 | 100 | Plus |
| X | 23542271 | X | 19610378..19610463 | 212..297 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:07:29 has no hits.
UFO09417.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:12 Download gff for
UFO09417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HspB8-RB | 337..927 | 1..589 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:09 Download gff for
UFO09417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14207-RB | 296..886 | 1..589 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:28 Download gff for
UFO09417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14207-RB | 296..886 | 1..589 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:28 Download gff for
UFO09417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19610696..19610892 | 393..589 | 98 | == | Plus |
| X | 19605494..19605682 | 1..187 | 97 | -> | Plus |
| X | 19609463..19609489 | 188..214 | 100 | -> | Plus |
| X | 19610381..19610462 | 215..296 | 100 | -> | Plus |
| X | 19610528..19610623 | 297..392 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:09 Download gff for
UFO09417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19499527..19499715 | 1..187 | 97 | -> | Plus |
| arm_X | 19503496..19503522 | 188..214 | 100 | -> | Plus |
| arm_X | 19504414..19504495 | 215..296 | 100 | -> | Plus |
| arm_X | 19504561..19504656 | 297..392 | 100 | -> | Plus |
| arm_X | 19504729..19504925 | 393..589 | 98 | == | Plus |
