UFO09418.5prime Sequence
1109 bp (1012 high quality bases) assembled on 2011-08-17
> UFO09418.5prime
CAGTCGACATGTTCCGCTACCTGCTCGTCGCCTCCGCTATCCTGGCCTGC
GCCTACGGTGCCGCCACCTACAACCAGGAAGCTGGTGCCTACATCACAAA
GATCGGTTCCGACATCCAGCCCGAGGGCAACTACAACTACCAATACGAGA
CCAGCAACGGCATCGCCGCCCAGGAGTCCGGAATTGGAGGAAACCACGCC
AACGGAGGCTTCTCGTGGTACTCGCCCGAGGGTGAGCTCGTCCAGATCTC
GTACGTGGCCGACGAGAACGGTTACCAGCCCCAGGGAGCTCTCCTGCCCA
CTCCTCCTCCAATCCCAGCTGCCATCCTTAGGAGCTTGGAGTACATCCGC
ACCCATCCCCAATACGTCGAGCAGGAGTACCGCAGGCCCGCCCTCAGGAA
GGTCTTTGGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGG
GGCGAAGAAGTTGTCCATATTGGCCACGTTTAATCAAACTGGTGAAACTC
ACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGG
AATAGGCCAGGTTTTCACCGTACACGCCACATCTTGCGATATATGTGTAG
AACTGCCGGAATCGTCGTGTATTCACTCCAGAGCGATGAAACGTTCAGTG
CTCATGAAACGTGTACAGTGACTATCATTCACAGCTCACGTCTTCATGCC
ATCGATCGATGACTCACAGCGCCAATTGATAGCCGAACTGCCTATTTCTT
ACGCTTGAG
UFO09418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:07:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr67Fa1-RA | 554 | CG7941-RA | 60..461 | 9..410 | 1995 | 99.8 | Plus |
| Cpr67Fa2-RA | 565 | CG18349-RA | 55..456 | 9..410 | 1785 | 96.3 | Plus |
| Lcp4-RB | 527 | CG2044-RB | 274..345 | 257..328 | 255 | 90.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10890218..10890607 | 21..410 | 1935 | 99.7 | Plus |
| 3L | 28110227 | 3L | 10892019..10892407 | 22..410 | 1735 | 96.4 | Plus |
| 2R | 25286936 | 2R | 8437977..8438048 | 257..328 | 255 | 90.3 | Plus |
| 2R | 25286936 | 2R | 8435769..8435840 | 257..328 | 240 | 88.9 | Plus |
| 3L | 28110227 | 3L | 7093638..7093705 | 294..361 | 205 | 86.8 | Plus |
| 2R | 25286936 | 2R | 8430808..8430913 | 326..221 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:07:40 has no hits.
UFO09418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:12 Download gff for
UFO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67Fa1-RA | 45..459 | 1..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:14 Download gff for
UFO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67Fa1-RA | 52..466 | 1..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:33 Download gff for
UFO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67Fa1-RA | 52..466 | 1..416 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:33 Download gff for
UFO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10890218..10890607 | 21..410 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:14 Download gff for
UFO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10883318..10883707 | 21..410 | 99 | == | Plus |
