UFO09422.5prime Sequence
1134 bp (871 high quality bases) assembled on 2011-08-17
> UFO09422.5prime
CAGTCGACATGGCCCCGCCAAAGGCCGCCAGCCACCGTCCGGCGGTGCGG
CGCAAGAAGTCGGGCACCCTGGTGGACTCCATCCTGGACAAGTACCTCAA
CGTGCGCTTCTTCAAGTATCTGCTCCTGGAGCCGGCCGCTCTGCCCATAG
TTGGCCTCTTCGTGCTCCTGGCGGAGCTGGTCATCAACGTGGTGGTCATC
CAGCGGGTGCCCTACACAGAGATCGACTGGGTGGCTTACATGCAGGAGTG
CGAGGGCTTCCTGAACGGCACCACCAACTACAGTCTGTTGCGCGGCGACA
CAGGACCTCTTGTGTATCCAGCCGCCTTCGTGTATATCTACTCGGCTCTC
TACTACGTCACGTCCCACGGAACGAACGTTCGCCTGGCGCAGTACATCTT
CGCCGGGATCTACCTGCTCCAGCTGGCCCTGGTGCTGAGGCTGTACTCGA
AGAGCAGAAAGGTGCCGCCGTATGTGCTAGTGCTCAGTGCCTTCACGTCG
TATCGGATCCACTCGATATACGTGCTGCGACTGTTCAACGATCCGGTGGC
AGTGCTGCTCCTCTATGCCGCACTCAATTTGTTCCTGGACAGAAGGTGGA
CCCTGGGTAGCACCTTCTTCATCTTGGCGGTGGGCGTTAAGATGAACATC
CTGCTGTTTGCGCCTGCGCTCTTGCTGTTCTACTTGGCCAACCTGGGACT
TCTGCGGACGATCCTGCAGCTGGCTGTCTGCGGAGTGATACAACTGCTGC
TGGGCGCTCCTTTCCTGCTCACCCATCCTGTGGAGTATCTGCGGGGTGAC
CTTTGATTTGGGACCGCATTCTGGAGCACAAGTGGACGGGTCAACTATCG
CTTCCTGAGCATAGATCTGTTCGAAAACCGCACCTCCACGTTTCGCTTTT
GGGCCTGCATCTGCTGCTCCTGCTGGCCTTCCCCAGCCCACTTGGACCTT
TTTCAGAGCCTACGTGGGGCCTGCGCCGTAATTGGAGGATCCAGCTGCCG
CCCGCAAATTAGCCAGCAAATCCTCCAGCTGAATCGCGCGAAAAGACCTA
TAGACGGGTGGAAAAGGAATAGGGACAGGAACGGAAAAAGAGTTTTACAC
CGGACTGCAATTCCTTTTCTCTGGGAGGGTCCTT
UFO09422.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)not-RA | 1704 | CG4084-RA | 80..1131 | 9..1068 | 4605 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23706119..23706778 | 954..294 | 2915 | 97.7 | Minus |
| 2R | 25286936 | 2R | 23709427..23709713 | 295..9 | 1435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:06:37 has no hits.
UFO09422.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:09 Download gff for
UFO09422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)not-RA | 1869..2879 | 1..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:45 Download gff for
UFO09422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)not-RA | 73..1083 | 1..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:07 Download gff for
UFO09422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)not-RA | 73..1083 | 1..1018 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:07 Download gff for
UFO09422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23706119..23706777 | 295..954 | 97 | <- | Minus |
| 2R | 23709428..23709718 | 1..294 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:45 Download gff for
UFO09422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19593642..19594300 | 295..954 | 97 | <- | Minus |
| arm_2R | 19596951..19597241 | 1..294 | 98 | | Minus |
